Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD1Q96NR3 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
PTCHD1Q96NR3 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD1Q96NR3 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
PTCHD1Q96NR3 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.55□□□□□ -1.52
PTCHD1Q96NR3 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 GTF2IP4-201ENST00000453092 2054 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 CASC19-204ENST00000641001 2055 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 RNU6-877P-201ENST00000383868 107 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 Y_RNA.409-201ENST00000383990 98 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AL096800.1-201ENST00000405326 893 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 MIR1305-201ENST00000408300 86 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC007394.1-201ENST00000421941 531 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 BX323845.3-201ENST00000428215 527 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 FCF1P1-201ENST00000432690 571 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 RPS26P40-201ENST00000435209 294 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 ARPC3P1-201ENST00000437218 533 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 RPL12P11-201ENST00000439970 501 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC023141.8-201ENST00000442554 208 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 BX322784.1-201ENST00000455793 1077 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 BTF3P5-201ENST00000457252 467 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC023598.1-201ENST00000472521 361 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 THAP6-203ENST00000502620 582 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC097173.1-201ENST00000505862 819 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 MTCO1P35-201ENST00000515270 228 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AP004609.2-201ENST00000532177 190 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AL358913.1-201ENST00000554342 121 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC122134.1-201ENST00000565664 1104 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 TXNP4-201ENST00000575018 310 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC092017.3-201ENST00000638880 536 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC239868.2-201ENST00000564237 4527 ntBASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
PTCHD1Q96NR3 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 Y_RNA.1-201ENST00000352915 104 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 U8.3-201ENST00000363321 132 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 RNA5SP510-201ENST00000364697 99 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 RNU6-1103P-201ENST00000384150 107 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 MT-TD-201ENST00000387419 68 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 U3.23-201ENST00000391132 200 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 RN7SKP266-201ENST00000410232 287 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 RNU6-195P-201ENST00000411352 109 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 SPA17P1-201ENST00000416656 452 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 NUP35P2-201ENST00000416748 943 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 COX6CP17-201ENST00000421389 185 ntBASIC5.53□□□□□ -1.52
PTCHD1Q96NR3 PIGFP2-201ENST00000421400 651 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms