Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 AL121835.2-201ENST00000624253 3502 ntBASIC7□□□□□ -1.29
HLA-CQ95604 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 WBP11P1-201ENST00000562560 1931 ntBASIC7□□□□□ -1.29
HLA-CQ95604 TXNIP-204ENST00000582401 2926 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 Y_RNA.307-201ENST00000365022 117 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RNU6-1062P-201ENST00000383908 107 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RNU6-1207P-201ENST00000384343 107 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RNA5SP284-201ENST00000384547 118 ntBASIC7□□□□□ -1.29
HLA-CQ95604 MIR937-201ENST00000401271 86 ntBASIC7□□□□□ -1.29
HLA-CQ95604 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 DPH3P2-201ENST00000422618 250 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AL161636.2-201ENST00000445179 927 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC7□□□□□ -1.29
HLA-CQ95604 AL118520.1-201ENST00000450770 291 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC7□□□□□ -1.29
HLA-CQ95604 AC023194.2-201ENST00000465398 406 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AC083806.1-201ENST00000468934 316 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RN7SL187P-201ENST00000495587 303 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RNU4ATAC7P-201ENST00000516280 125 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RNU2-10P-201ENST00000516375 211 ntBASIC7□□□□□ -1.29
HLA-CQ95604 RNU7-51P-201ENST00000516560 62 ntBASIC7□□□□□ -1.29
HLA-CQ95604 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC7□□□□□ -1.29
HLA-CQ95604 AP005597.2-201ENST00000526238 341 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AC109635.4-202ENST00000531666 412 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AL137161.1-201ENST00000532231 390 ntBASIC7□□□□□ -1.29
HLA-CQ95604 DPPA3P2-201ENST00000553589 478 ntBASIC7□□□□□ -1.29
HLA-CQ95604 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC7□□□□□ -1.29
HLA-CQ95604 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC7□□□□□ -1.29
HLA-CQ95604 AC090651.1-201ENST00000567865 634 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AC060771.1-201ENST00000582031 164 ntBASIC7□□□□□ -1.29
HLA-CQ95604 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 AC004805.3-201ENST00000603178 310 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AC104662.1-201ENST00000604448 511 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AC103710.2-201ENST00000609912 942 ntBASIC7□□□□□ -1.29
HLA-CQ95604 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC7□□□□□ -1.29
HLA-CQ95604 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 MED6-212ENST00000615788 1700 ntTSL 5 BASIC7□□□□□ -1.29
HLA-CQ95604 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 AC002525.1-201ENST00000624392 1622 ntBASIC7□□□□□ -1.29
HLA-CQ95604 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.29
HLA-CQ95604 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC7□□□□□ -1.29
HLA-CQ95604 ANKS1B-215ENST00000549493 3328 ntTSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 ARHGAP42P5-201ENST00000548856 2936 ntBASIC7□□□□□ -1.29
HLA-CQ95604 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
HLA-CQ95604 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
HLA-CQ95604 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC6.99□□□□□ -1.29
HLA-CQ95604 KPNA2P1-201ENST00000458289 1591 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HLA-CQ95604 NXPH1-205ENST00000602349 1953 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 USPL1-201ENST00000255304 3814 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HLA-CQ95604 RNU1-115P-201ENST00000365329 160 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 SNORD116-11-201ENST00000383882 92 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AL391417.1-201ENST00000404100 426 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AL929472.1-201ENST00000417484 429 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 RPL21P50-201ENST00000417698 477 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC068533.1-201ENST00000418542 415 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 RPS17P17-201ENST00000419392 409 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.99□□□□□ -1.29
HLA-CQ95604 OR2AS1P-201ENST00000427827 319 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 RPS26P56-201ENST00000444468 240 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 AC005297.2-201ENST00000450430 606 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 RN7SL273P-201ENST00000481561 299 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.99□□□□□ -1.29
HLA-CQ95604 H3F3AP3-201ENST00000497682 407 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 RN7SL284P-201ENST00000498823 275 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 RNY3P15-201ENST00000516297 97 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 RNA5SP271-201ENST00000516700 88 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 IGKV3D-31-201ENST00000519131 281 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC6.99□□□□□ -1.29
HLA-CQ95604 OR8R1P-201ENST00000543943 764 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC090615.1-201ENST00000577519 154 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 MIR3135A-201ENST00000578460 77 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC6.99□□□□□ -1.29
HLA-CQ95604 BNIP3P16-201ENST00000589779 534 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC6.99□□□□□ -1.29
HLA-CQ95604 AC006157.1-201ENST00000611750 366 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AC011890.2-201ENST00000613393 294 ntBASIC6.99□□□□□ -1.29
HLA-CQ95604 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HLA-CQ95604 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC6.99□□□□□ -1.29
HLA-CQ95604 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.99□□□□□ -1.29
HLA-CQ95604 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC6.99□□□□□ -1.29
HLA-CQ95604 ALG13-201ENST00000251943 3997 ntTSL 2 BASIC6.99□□□□□ -1.29
HLA-CQ95604 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HLA-CQ95604 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
HLA-CQ95604 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC6.99□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms