Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL031666.3-201ENST00000609320 1006 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 MIR7641-1-201ENST00000627518 61 ntBASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 ASAH1-263ENST00000637872 886 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
ZNF540Q8NDQ6 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 SAMMSON-226ENST00000642089 1582 ntBASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 AL157700.1-201ENST00000561973 1432 ntBASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.74
ZNF540Q8NDQ6 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC079741.1-201ENST00000321498 212 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 BX510359.2-201ENST00000417920 305 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC093698.1-201ENST00000423843 571 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC234779.1-201ENST00000425910 285 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 NANOGP6-201ENST00000429190 847 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC006994.1-201ENST00000438212 839 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC092809.1-201ENST00000441469 474 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC007000.2-201ENST00000442564 487 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC068135.1-201ENST00000446164 246 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC234781.3-201ENST00000452540 973 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC079168.2-201ENST00000453977 416 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 NDUFA12P1-201ENST00000455914 406 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 CEACAMP4-201ENST00000457676 421 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 RPL23AP2-201ENST00000471227 466 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC106872.2-201ENST00000494303 480 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 TRAV31-201ENST00000502780 342 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 IGBP1P5-201ENST00000507524 1000 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 SNORA70.14-201ENST00000516205 110 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 SNORA48.9-201ENST00000516419 162 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC104115.2-201ENST00000523026 687 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AP006289.1-201ENST00000538089 277 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC023762.1-201ENST00000603280 584 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC020910.2-201ENST00000603635 610 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC020910.3-201ENST00000603701 874 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC010201.1-201ENST00000605051 540 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AL355802.4-201ENST00000607635 548 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC024595.1-201ENST00000623088 387 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 MIR4278-201ENST00000636094 69 ntBASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
ZNF540Q8NDQ6 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC092745.2-202ENST00000411880 369 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC023128.2-201ENST00000420880 1223 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC062016.2-201ENST00000420950 676 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 UBE2V1P1-201ENST00000430836 445 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 NRBF2P3-201ENST00000432731 865 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AL359265.2-201ENST00000434367 631 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AURKAPS2-201ENST00000454983 333 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 RPS5P7-201ENST00000456664 608 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 AC091868.1-201ENST00000508746 304 ntBASIC4.14□□□□□ -1.75
ZNF540Q8NDQ6 PARP4P3-201ENST00000510265 317 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms