Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.46□□□□□ -1.86
CHD3Q12873 HPRT1P2-201ENST00000505250 544 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC119751.5-201ENST00000514077 770 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.46□□□□□ -1.86
CHD3Q12873 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC3.46□□□□□ -1.86
CHD3Q12873 AC020914.4-201ENST00000597690 277 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC114878.2-201ENST00000604863 1251 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AL049634.3-201ENST00000604968 457 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 AC110741.2-201ENST00000605278 268 ntBASIC3.46□□□□□ -1.86
CHD3Q12873 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.46□□□□□ -1.86
CHD3Q12873 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CHD3Q12873 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
CHD3Q12873 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 AL590806.1-201ENST00000415818 853 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC083863.1-201ENST00000438811 231 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.45□□□□□ -1.86
CHD3Q12873 EXTL2P1-201ENST00000446218 416 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC074250.1-201ENST00000511117 192 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.45□□□□□ -1.86
CHD3Q12873 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.45□□□□□ -1.86
CHD3Q12873 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.45□□□□□ -1.86
CHD3Q12873 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 AC037471.2-201ENST00000564941 598 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC009101.1-201ENST00000568135 242 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 ZNF415P1-201ENST00000582279 1166 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC3.45□□□□□ -1.86
CHD3Q12873 QTRT1P1-201ENST00000604344 1078 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC004825.2-201ENST00000616634 455 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC3.45□□□□□ -1.86
CHD3Q12873 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC3.45□□□□□ -1.86
CHD3Q12873 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.45□□□□□ -1.86
CHD3Q12873 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 ASNSP1-201ENST00000518311 1939 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 AC073346.2-201ENST00000624724 2058 ntBASIC3.45□□□□□ -1.86
CHD3Q12873 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CHD3Q12873 Z98941.1-201ENST00000407764 100 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AC091286.1-201ENST00000431233 461 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 RPS6P12-201ENST00000432491 726 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 SYT14P1-201ENST00000481459 721 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AC110792.1-201ENST00000491826 472 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AL139099.1-201ENST00000497398 403 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 CAB39P1-201ENST00000502277 460 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 OR8I1P-201ENST00000529291 931 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC3.44□□□□□ -1.86
CHD3Q12873 AL354798.1-201ENST00000622505 329 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AC009093.8-201ENST00000641769 292 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC3.44□□□□□ -1.86
CHD3Q12873 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 HSPA8P1-201ENST00000425843 1833 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 AC018555.1-201ENST00000567548 1980 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 RNU6-213P-201ENST00000384051 104 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AL138878.1-201ENST00000405131 347 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 RBMY1KP-201ENST00000423480 476 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC3.44□□□□□ -1.86
CHD3Q12873 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 AC104306.1-201ENST00000449702 371 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 HMGB3P22-202ENST00000451823 572 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 IGHV3-63-201ENST00000518422 341 ntBASIC3.44□□□□□ -1.86
CHD3Q12873 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.44□□□□□ -1.86
CHD3Q12873 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.44□□□□□ -1.86
CHD3Q12873 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.44□□□□□ -1.86
CHD3Q12873 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.44□□□□□ -1.86
CHD3Q12873 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CHD3Q12873 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
CHD3Q12873 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CHD3Q12873 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC3.44□□□□□ -1.86
CHD3Q12873 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC3.44□□□□□ -1.86
CHD3Q12873 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
CHD3Q12873 RPL21P17-201ENST00000397467 475 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC3.43□□□□□ -1.86
CHD3Q12873 AC007967.1-201ENST00000455422 1159 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 RPS20P21-201ENST00000466859 343 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 GAPDHP36-201ENST00000480688 918 ntBASIC3.43□□□□□ -1.86
CHD3Q12873 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.43□□□□□ -1.86
CHD3Q12873 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.43□□□□□ -1.86
CHD3Q12873 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.43□□□□□ -1.86
CHD3Q12873 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.43□□□□□ -1.86
CHD3Q12873 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.43□□□□□ -1.86
CHD3Q12873 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms