Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 AC004944.1-201ENST00000517807 3059 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 CDC27P2-201ENST00000425026 1922 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 Z82217.1-201ENST00000625157 8149 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
BRCA1P38398 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 AC097504.1-201ENST00000515103 2415 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 GVINP1-202ENST00000531871 7271 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 RNU6-167P-201ENST00000384292 106 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.53□□□□□ -1.68
BRCA1P38398 DPPA2P2-201ENST00000418220 897 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC4.53□□□□□ -1.68
BRCA1P38398 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.53□□□□□ -1.68
BRCA1P38398 MTND6P32-201ENST00000457611 483 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.53□□□□□ -1.68
BRCA1P38398 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.53□□□□□ -1.68
BRCA1P38398 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.53□□□□□ -1.68
BRCA1P38398 AC010591.1-201ENST00000603941 649 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 AC015849.6-201ENST00000605454 474 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 AL591424.2-201ENST00000617023 128 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 AC073869.7-201ENST00000640874 297 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.53□□□□□ -1.68
BRCA1P38398 AL133383.2-201ENST00000622958 2336 ntBASIC4.53□□□□□ -1.68
BRCA1P38398 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
BRCA1P38398 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.53□□□□□ -1.69
BRCA1P38398 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.53□□□□□ -1.69
BRCA1P38398 MTND5P23-201ENST00000430812 1655 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4.52□□□□□ -1.69
BRCA1P38398 LINC01109-201ENST00000603837 3081 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 VN1R8P-201ENST00000407739 893 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 SMC4P1-201ENST00000414479 527 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC4.52□□□□□ -1.69
BRCA1P38398 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.52□□□□□ -1.69
BRCA1P38398 ZDHHC20P2-201ENST00000424108 429 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 NANOGNBP1-201ENST00000448444 480 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC096576.1-201ENST00000489014 359 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 RPL31P61-201ENST00000496160 376 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 RN7SKP46-201ENST00000515942 234 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 RN7SKP5-201ENST00000517045 272 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 OR4A12P-201ENST00000530847 918 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC006386.2-201ENST00000624491 75 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 AC012005.1-201ENST00000624575 75 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.52□□□□□ -1.69
BRCA1P38398 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.52□□□□□ -1.69
BRCA1P38398 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.52□□□□□ -1.69
BRCA1P38398 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
BRCA1P38398 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 RNA5SP432-201ENST00000362480 116 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
BRCA1P38398 OSTCP5-201ENST00000425293 453 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.52□□□□□ -1.69
BRCA1P38398 TMED11P-201ENST00000479478 690 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 AC091544.1-201ENST00000484702 348 ntBASIC4.52□□□□□ -1.69
BRCA1P38398 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.52□□□□□ -1.69
BRCA1P38398 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.52□□□□□ -1.69
BRCA1P38398 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC4.52□□□□□ -1.69
BRCA1P38398 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.51□□□□□ -1.69
BRCA1P38398 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.51□□□□□ -1.69
BRCA1P38398 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.51□□□□□ -1.69
BRCA1P38398 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
BRCA1P38398 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.51□□□□□ -1.69
BRCA1P38398 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
BRCA1P38398 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.51□□□□□ -1.69
BRCA1P38398 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.51□□□□□ -1.69
BRCA1P38398 RPL21P8-201ENST00000465083 535 ntBASIC4.51□□□□□ -1.69
BRCA1P38398 RPL21P13-201ENST00000488305 481 ntBASIC4.51□□□□□ -1.69
BRCA1P38398 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.51□□□□□ -1.69
BRCA1P38398 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.51□□□□□ -1.69
BRCA1P38398 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.51□□□□□ -1.69
BRCA1P38398 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.51□□□□□ -1.69
BRCA1P38398 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
BRCA1P38398 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC4.5□□□□□ -1.69
BRCA1P38398 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms