Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ABI1P1-201ENST00000603375 1120 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AC015849.2-201ENST00000605738 409 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AC005344.1-201ENST00000613391 459 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 AF001550.2-201ENST00000636643 217 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.26□□□□□ -1.57
HOXC9P31274 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC9P31274 AC024560.2-201ENST00000507981 1497 ntBASIC5.26□□□□□ -1.57
HOXC9P31274 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HOXC9P31274 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC9P31274 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.25□□□□□ -1.57
HOXC9P31274 RPL21P17-201ENST00000397467 475 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 AL139247.1-201ENST00000422768 325 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC9P31274 TPT1P1-201ENST00000458495 518 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 RNA5SP103-201ENST00000459503 118 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 RPL5P13-201ENST00000462840 709 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 MTCO2P9-201ENST00000503214 694 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC5.25□□□□□ -1.57
HOXC9P31274 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC9P31274 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.25□□□□□ -1.57
HOXC9P31274 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC9P31274 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC9P31274 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC9P31274 AL139022.2-201ENST00000606934 443 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 AC026368.1-201ENST00000614934 690 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC9P31274 AL034408.1-202ENST00000636088 415 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 AL590396.2-201ENST00000636511 1041 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC9P31274 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 AP004289.2-201ENST00000444413 1457 ntBASIC5.25□□□□□ -1.57
HOXC9P31274 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC9P31274 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
HOXC9P31274 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 BCLAF1P2-201ENST00000624956 2609 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 RNA5SP97-201ENST00000365006 84 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 RNU6-761P-201ENST00000384148 107 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 RNU6-1263P-201ENST00000384601 106 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 MIR137-201ENST00000385223 102 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 AC007066.1-201ENST00000392902 381 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 ATP5F1P6-201ENST00000402768 767 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 SNORA11.1-201ENST00000408133 129 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 RPL26P37-201ENST00000411983 438 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC9P31274 MTCO2P1-201ENST00000424648 477 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 UBE2D3P3-201ENST00000426992 425 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.24□□□□□ -1.57
HOXC9P31274 HIGD1AP4-201ENST00000430194 280 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 Z74696.2-201ENST00000436514 498 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 ARL4AP3-201ENST00000441452 574 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 RNF2P1-201ENST00000442955 1010 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXC9P31274 AL133162.1-201ENST00000463228 453 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXC9P31274 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC9P31274 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC009852.2-201ENST00000567898 485 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 AC104072.1-201ENST00000568817 668 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC9P31274 AL049634.3-201ENST00000604968 457 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXC9P31274 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXC9P31274 AC092159.4-201ENST00000624944 550 ntBASIC5.24□□□□□ -1.57
HOXC9P31274 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXC9P31274 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
HOXC9P31274 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC9P31274 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.23□□□□□ -1.57
HOXC9P31274 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 AP001284.1-201ENST00000528393 2118 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
HOXC9P31274 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
HOXC9P31274 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
HOXC9P31274 RNU6-792P-201ENST00000363490 107 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 RNU6-609P-201ENST00000365459 107 ntBASIC5.23□□□□□ -1.57
HOXC9P31274 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.23□□□□□ -1.57
HOXC9P31274 SNORD3H-201ENST00000384486 214 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms