Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AP000769.2-201ENST00000602344 396 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC073648.5-201ENST00000603502 305 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC133644.2-201ENST00000608142 540 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC024560.3-201ENST00000608482 349 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 uc_338.7-201ENST00000621834 124 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 AC135068.5-201ENST00000624197 983 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 CYP4F35P-202ENST00000636121 390 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC4.15□□□□□ -1.75
HOXD3P31249 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC4.15□□□□□ -1.75
HOXD3P31249 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 AC109446.4-201ENST00000623235 2755 ntBASIC4.15□□□□□ -1.75
HOXD3P31249 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
HOXD3P31249 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
HOXD3P31249 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 AL356473.1-201ENST00000406203 1408 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
HOXD3P31249 Y_RNA.18-201ENST00000362461 102 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 RN7SKP185-201ENST00000362813 326 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 Y_RNA.517-201ENST00000384551 106 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 HSPA8P15-201ENST00000401676 786 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 DUTP5-201ENST00000406790 469 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 RPS15AP38-201ENST00000413110 372 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC093162.1-201ENST00000419682 124 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 Z99497.1-201ENST00000421282 135 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 CYCSP46-201ENST00000423569 204 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 MTCO3P30-201ENST00000426425 670 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 MED14P1-201ENST00000430517 648 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 PSMD10P3-201ENST00000437000 448 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 TCEA1P3-201ENST00000443005 880 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 USP9YP29-201ENST00000445112 563 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 GAPDHP25-201ENST00000447061 1001 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 EPS15P1-201ENST00000448836 336 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 RPL23AP35-201ENST00000451906 501 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AL354710.1-201ENST00000453641 246 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC112206.1-201ENST00000468416 477 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC107401.1-201ENST00000503426 685 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 CBX3P3-201ENST00000508108 532 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC079140.3-201ENST00000511111 550 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 RN7SKP66-201ENST00000516681 231 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 CDH12P4-201ENST00000517835 295 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 CDH12P3-201ENST00000517935 295 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 CDH12P1-201ENST00000518435 295 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC008562.1-201ENST00000521763 330 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC136777.2-201ENST00000522979 358 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AF279873.1-201ENST00000523393 313 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC4.14□□□□□ -1.75
HOXD3P31249 HIGD1AP5-201ENST00000529959 259 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.14□□□□□ -1.75
HOXD3P31249 RPL10P14-201ENST00000565265 298 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AL512347.1-201ENST00000566420 503 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC4.14□□□□□ -1.75
HOXD3P31249 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
HOXD3P31249 ZNF415P1-201ENST00000582279 1166 ntBASIC4.14□□□□□ -1.75
HOXD3P31249 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC4.14□□□□□ -1.75
HOXD3P31249 AC115085.1-201ENST00000588924 229 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms