Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 UGT2B27P-201ENST00000505092 1620 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 WDR89-202ENST00000394942 2993 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 LPAL2-203ENST00000454031 2498 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 APP-206ENST00000359726 3294 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 AC010401.2-201ENST00000575137 4934 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 PDE4B-207ENST00000480109 2037 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 NEK5-201ENST00000355568 2918 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL8A1P27658 C11orf54-207ENST00000528288 4094 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL8A1P27658 SNORD113-7-201ENST00000363762 77 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 Y_RNA.210-201ENST00000364161 110 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 RNU6-593P-201ENST00000364716 112 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.91□□□□□ -1.46
COL8A1P27658 MIR937-201ENST00000401271 86 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 RPS4XP9-201ENST00000405151 780 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 AL606923.1-201ENST00000406616 190 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 AL022100.1-202ENST00000421214 548 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 PDSS1P1-201ENST00000422953 1114 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 RPL7L1P10-201ENST00000427790 463 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 AL731534.1-201ENST00000434711 269 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 AL954705.1-201ENST00000435277 559 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 RPL35AP28-201ENST00000459730 331 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 AC073610.1-201ENST00000489971 396 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 LINC01181-201ENST00000503718 556 ntTSL 4 BASIC5.91□□□□□ -1.46
COL8A1P27658 AC008652.1-201ENST00000505261 469 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 SCARNA24.1-201ENST00000516465 137 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.91□□□□□ -1.46
COL8A1P27658 IGHV3-63-201ENST00000518422 341 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.91□□□□□ -1.46
COL8A1P27658 CYCSP38-201ENST00000559840 322 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 MIR5186-201ENST00000577504 120 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 BNIP3P25-201ENST00000596023 559 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 RPSAP75-201ENST00000605848 301 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 DAZ3-201ENST00000315357 3277 ntAPPRIS ALT2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 DAZ2-201ENST00000382294 3277 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 DAZ4-204ENST00000415508 3277 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 AC004014.2-201ENST00000623718 5122 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 SSX7-201ENST00000298181 1311 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 MFSD8-217ENST00000641178 4374 ntBASIC5.91□□□□□ -1.46
COL8A1P27658 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL8A1P27658 SSX5-201ENST00000311798 1384 ntAPPRIS P4 TSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC5.91□□□□□ -1.46
COL8A1P27658 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
COL8A1P27658 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 AC068860.1-201ENST00000623701 3736 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AL359263.1-201ENST00000441188 2796 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 AC089998.1-201ENST00000548575 3141 ntBASIC5.9□□□□□ -1.46
COL8A1P27658 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC5.9□□□□□ -1.46
COL8A1P27658 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC5.9□□□□□ -1.46
COL8A1P27658 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.46
COL8A1P27658 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL8A1P27658 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms