Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.71□□□□□ -1.81
COL6A3P12111 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC3.71□□□□□ -1.81
COL6A3P12111 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC3.71□□□□□ -1.81
COL6A3P12111 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.71□□□□□ -1.81
COL6A3P12111 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC3.71□□□□□ -1.81
COL6A3P12111 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.71□□□□□ -1.81
COL6A3P12111 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.71□□□□□ -1.81
COL6A3P12111 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL6A3P12111 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A3P12111 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL6A3P12111 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A3P12111 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A3P12111 AL009174.1-201ENST00000426577 416 ntBASIC3.71□□□□□ -1.82
COL6A3P12111 AC128713.1-201ENST00000471495 306 ntBASIC3.71□□□□□ -1.82
COL6A3P12111 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.71□□□□□ -1.82
COL6A3P12111 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.71□□□□□ -1.82
COL6A3P12111 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.71□□□□□ -1.82
COL6A3P12111 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
COL6A3P12111 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
COL6A3P12111 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL6A3P12111 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.71□□□□□ -1.82
COL6A3P12111 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.71□□□□□ -1.82
COL6A3P12111 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL6A3P12111 BX276092.3-201ENST00000424182 230 ntBASIC3.71□□□□□ -1.82
COL6A3P12111 RNA5SP208-201ENST00000516156 78 ntBASIC3.71□□□□□ -1.82
COL6A3P12111 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC3.71□□□□□ -1.82
COL6A3P12111 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
COL6A3P12111 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL6A3P12111 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC3.7□□□□□ -1.82
COL6A3P12111 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 AL035458.1-201ENST00000433096 585 ntBASIC3.7□□□□□ -1.82
COL6A3P12111 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 IGHVIII-44-202ENST00000636235 289 ntBASIC3.7□□□□□ -1.82
COL6A3P12111 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL6A3P12111 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
COL6A3P12111 GDA-209ENST00000545168 5362 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.7□□□□□ -1.82
COL6A3P12111 RPS3AP43-201ENST00000479743 781 ntBASIC3.7□□□□□ -1.82
COL6A3P12111 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.7□□□□□ -1.82
COL6A3P12111 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.7□□□□□ -1.82
COL6A3P12111 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.7□□□□□ -1.82
COL6A3P12111 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.7□□□□□ -1.82
COL6A3P12111 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 AC097504.1-201ENST00000515103 2415 ntBASIC3.7□□□□□ -1.82
COL6A3P12111 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL6A3P12111 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
COL6A3P12111 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A3P12111 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A3P12111 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC3.69□□□□□ -1.82
COL6A3P12111 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A3P12111 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 AL034351.1-201ENST00000605288 668 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC3.69□□□□□ -1.82
COL6A3P12111 MIR133A2-201ENST00000347538 102 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 AL358178.1-201ENST00000407698 397 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 RPL21P40-201ENST00000428586 483 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A3P12111 RPS4XP6-201ENST00000477670 797 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 AK5-208ENST00000478255 556 ntTSL 2 BASIC3.69□□□□□ -1.82
COL6A3P12111 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A3P12111 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.69□□□□□ -1.82
COL6A3P12111 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A3P12111 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
COL6A3P12111 HSPA8P4-201ENST00000511877 1920 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 AC093535.2-201ENST00000624769 2326 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A3P12111 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL6A3P12111 AL357075.1-201ENST00000404107 726 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 OR5AW1P-201ENST00000426334 1006 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 NPM1P39-201ENST00000449818 867 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 RPL7P47-201ENST00000497299 556 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 RNA5SP230-201ENST00000517039 122 ntBASIC3.69□□□□□ -1.82
COL6A3P12111 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC3.69□□□□□ -1.82
COL6A3P12111 AC005476.1-201ENST00000554427 397 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms