Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A1P02462 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL4A1P02462 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
COL4A1P02462 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A1P02462 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
COL4A1P02462 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.36□□□□□ -1.71
COL4A1P02462 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A1P02462 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL4A1P02462 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL4A1P02462 RNA5SP374-201ENST00000362939 125 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 RNA5SP42-201ENST00000364278 115 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 CYCSP10-201ENST00000417973 294 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 AL512649.1-201ENST00000428997 581 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A1P02462 GMPSP1-201ENST00000514075 579 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.35□□□□□ -1.71
COL4A1P02462 GTF2IP8-201ENST00000560687 584 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC006116.10-201ENST00000591836 581 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A1P02462 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC069209.1-201ENST00000619282 651 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A1P02462 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A1P02462 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC097634.1-201ENST00000604491 2467 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A1P02462 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A1P02462 NCOA4P2-201ENST00000340589 1813 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.35□□□□□ -1.71
COL4A1P02462 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC073073.2-201ENST00000609827 2578 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 AC092435.4-201ENST00000623012 4159 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A1P02462 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL4A1P02462 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A1P02462 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 AC063979.1-201ENST00000415539 377 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 RPL21P109-201ENST00000422213 475 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 AC096638.2-201ENST00000434965 711 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A1P02462 AC139783.2-201ENST00000504847 1145 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.35□□□□□ -1.71
COL4A1P02462 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.35□□□□□ -1.71
COL4A1P02462 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.35□□□□□ -1.71
COL4A1P02462 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC4.35□□□□□ -1.71
COL4A1P02462 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC4.34□□□□□ -1.71
COL4A1P02462 BDP1P-201ENST00000582658 1990 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
COL4A1P02462 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
COL4A1P02462 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL4A1P02462 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A1P02462 HIGD1AP12-201ENST00000427832 281 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.34□□□□□ -1.71
COL4A1P02462 AC010655.1-201ENST00000449336 292 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.34□□□□□ -1.71
COL4A1P02462 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC4.34□□□□□ -1.71
COL4A1P02462 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.34□□□□□ -1.71
COL4A1P02462 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.34□□□□□ -1.71
COL4A1P02462 SULT1C2P2-201ENST00000562517 294 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 MRPS35P3-201ENST00000603189 709 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 YPEL5P2-201ENST00000605553 359 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 AC243756.2-201ENST00000618406 463 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 AC026422.1-201ENST00000623961 452 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC4.34□□□□□ -1.71
COL4A1P02462 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL4A1P02462 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.34□□□□□ -1.72
COL4A1P02462 SMG1P4-204ENST00000523028 4131 ntBASIC4.34□□□□□ -1.72
COL4A1P02462 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
COL4A1P02462 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL4A1P02462 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A1P02462 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A1P02462 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A1P02462 AL357075.1-201ENST00000404107 726 ntBASIC4.33□□□□□ -1.72
COL4A1P02462 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A1P02462 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A1P02462 MTND6P6-201ENST00000478031 263 ntBASIC4.33□□□□□ -1.72
COL4A1P02462 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A1P02462 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A1P02462 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.33□□□□□ -1.72
COL4A1P02462 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A1P02462 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.33□□□□□ -1.72
COL4A1P02462 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC4.33□□□□□ -1.72
COL4A1P02462 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.33□□□□□ -1.72
COL4A1P02462 AC009303.3-201ENST00000591103 736 ntBASIC4.33□□□□□ -1.72
COL4A1P02462 AC009229.4-201ENST00000623854 1947 ntBASIC4.33□□□□□ -1.72
COL4A1P02462 AL078595.2-201ENST00000605309 1780 ntBASIC4.33□□□□□ -1.72
COL4A1P02462 AL645937.1-201ENST00000641739 1652 ntBASIC4.33□□□□□ -1.72
COL4A1P02462 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.72
COL4A1P02462 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.33□□□□□ -1.72
COL4A1P02462 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms