Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL591135.1-201ENST00000401578 5914 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC119674.1-213ENST00000641177 1386 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC020656.2-201ENST00000613291 5309 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 AC019072.1-201ENST00000604535 1551 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA3O43365 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA3O43365 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA3O43365 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA3O43365 RNU6-1090P-201ENST00000364065 94 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RNU1-85P-201ENST00000364127 164 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 Y_RNA.573-201ENST00000384763 105 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RNU11-201ENST00000387069 134 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 U3.25-201ENST00000391209 220 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 OR2AT2P-201ENST00000413438 905 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 USP9YP36-201ENST00000424581 829 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 ISCA1P6-201ENST00000427740 390 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA3O43365 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 RNU6-1218P-201ENST00000458990 108 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 RN7SL352P-201ENST00000466002 277 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RPS15AP17-201ENST00000470598 390 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 MTND1P3-201ENST00000484956 952 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RPS4XP14-201ENST00000493072 781 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC008628.2-201ENST00000502605 298 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 TMEM251P1-201ENST00000503717 318 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC034159.1-201ENST00000513885 583 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AC046134.1-201ENST00000514454 666 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 SNORA20.3-201ENST00000516880 132 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RNU2-46P-201ENST00000517038 113 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA3O43365 AP005639.1-201ENST00000526939 192 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 AK6P1-201ENST00000540219 478 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC022404.1-201ENST00000555320 273 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AC068714.1-201ENST00000559623 800 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 HMGB1P33-201ENST00000563485 527 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 MIR4433B-201ENST00000581329 102 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA3O43365 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 AL360012.1-201ENST00000602813 131 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AL365503.1-201ENST00000605247 905 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA3O43365 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA3O43365 RNA5SP440-201ENST00000612665 119 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AC104260.1-201ENST00000616660 539 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 AC140479.2-201ENST00000421567 3130 ntBASIC4.79□□□□□ -1.64
HOXA3O43365 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA3O43365 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA3O43365 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA3O43365 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA3O43365 MTND4P29-201ENST00000503122 1372 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA3O43365 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXA3O43365 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 KCNE2-201ENST00000290310 1051 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 RNU6-761P-201ENST00000384148 107 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 MT-TL1-201ENST00000386347 75 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 SNORD115.1-201ENST00000391109 76 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RNU6-876P-201ENST00000391295 104 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AL360271.1-201ENST00000395679 510 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 FIGN-202ENST00000409634 746 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 RNU6-195P-201ENST00000411352 109 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA3O43365 SPA17P1-201ENST00000416656 452 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 RPS17P17-201ENST00000419392 409 ntBASIC4.78□□□□□ -1.64
HOXA3O43365 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA3O43365 RPL34P3-201ENST00000421454 338 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms