Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 AL121655.1-201ENST00000605811 308 ntBASIC5.9□□□□□ -1.46
SSU72Q9NP77 AL451049.1-201ENST00000608672 497 ntBASIC5.9□□□□□ -1.46
SSU72Q9NP77 uc_338.33-201ENST00000614988 170 ntBASIC5.9□□□□□ -1.46
SSU72Q9NP77 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.9□□□□□ -1.46
SSU72Q9NP77 MIR6133-201ENST00000617057 108 ntBASIC5.9□□□□□ -1.46
SSU72Q9NP77 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
SSU72Q9NP77 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.9□□□□□ -1.46
SSU72Q9NP77 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC5.9□□□□□ -1.46
SSU72Q9NP77 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
SSU72Q9NP77 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
SSU72Q9NP77 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.47
SSU72Q9NP77 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.9□□□□□ -1.47
SSU72Q9NP77 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.9□□□□□ -1.47
SSU72Q9NP77 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC5.9□□□□□ -1.47
SSU72Q9NP77 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.9□□□□□ -1.47
SSU72Q9NP77 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
SSU72Q9NP77 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SSU72Q9NP77 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.9□□□□□ -1.47
SSU72Q9NP77 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
SSU72Q9NP77 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.9□□□□□ -1.47
SSU72Q9NP77 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 Y_RNA.132-201ENST00000363421 102 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 RNU6-1322P-201ENST00000364309 107 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 RN7SKP69-201ENST00000365390 305 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 RNU1-39P-201ENST00000383897 165 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC104297.1-201ENST00000393779 870 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 RNA5SP156-201ENST00000410250 110 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 RN7SKP144-201ENST00000411108 279 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 EIF1P3-201ENST00000423841 334 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 OR10T1P-201ENST00000424327 947 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 OSTCP4-201ENST00000424397 449 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL138479.1-201ENST00000426913 484 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 HMGB3P12-201ENST00000438745 556 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 RPL5P25-201ENST00000441148 775 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 COX4I1P2-201ENST00000447446 547 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 RPL31P15-201ENST00000449770 338 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL672138.1-201ENST00000450604 1015 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC233279.1-201ENST00000455300 423 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC021660.1-201ENST00000465006 554 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 RPL21P71-201ENST00000465598 459 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC093278.1-201ENST00000494700 600 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 IGBP1P4-201ENST00000503202 879 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 RNU6-327P-201ENST00000516270 127 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 BRD9P1-201ENST00000529855 560 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC103855.4-201ENST00000533158 265 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC008127.2-201ENST00000549925 1075 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 PSMA3P-201ENST00000555485 635 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 TPMTP1-201ENST00000592307 737 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 LINC01396-201ENST00000609099 527 ntTSL 3 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 Metazoa_SRP.66-201ENST00000615609 282 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AL121985.3-201ENST00000620690 523 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC005858.4-201ENST00000623191 700 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 MIR193BHG-214ENST00000641765 509 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 RBMY1HP-201ENST00000382759 1389 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AP000473.2-201ENST00000602659 1537 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
SSU72Q9NP77 AC016745.2-201ENST00000608834 3443 ntBASIC5.89□□□□□ -1.47
SSU72Q9NP77 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
SSU72Q9NP77 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
SSU72Q9NP77 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SSU72Q9NP77 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
SSU72Q9NP77 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms