Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 BTG3P1-201ENST00000435859 716 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 CASP3P1-201ENST00000446037 609 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC010476.1-201ENST00000519111 851 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC068446.3-201ENST00000555285 382 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC090877.1-201ENST00000561418 344 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AL592295.2-201ENST00000612578 206 ntBASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC112Q8NEF3 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 RNA5SP479-201ENST00000364858 117 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 MTND4LP13-201ENST00000425022 298 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 MTCO1P51-201ENST00000427672 1060 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 HIGD1AP4-201ENST00000430194 280 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 NANOGP10-201ENST00000453325 895 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 EIF2S2P4-201ENST00000461070 984 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AC099522.1-202ENST00000514718 367 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 RN7SKP209-201ENST00000516888 304 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AL161729.3-201ENST00000603533 673 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AC008121.2-201ENST00000614647 523 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AP003497.2-201ENST00000624220 967 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 AP000843.1-201ENST00000624880 701 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 OR6C71P-202ENST00000641886 1107 ntBASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC112Q8NEF3 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 RPL23AP26-201ENST00000412728 464 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 VN1R31P-201ENST00000417498 730 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 RPL23AP38-201ENST00000423801 469 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 RPS3AP54-201ENST00000435535 734 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 RAB9AP5-201ENST00000437794 597 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 RAB9AP2-201ENST00000443911 597 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 RPL38P1-201ENST00000460914 211 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AC008802.1-201ENST00000519121 791 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 CBX3P5-201ENST00000552017 521 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 CYP2C60P-201ENST00000566088 139 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 MIR3138-201ENST00000585238 82 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 uc_338.32-201ENST00000615087 172 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AL139089.1-201ENST00000620372 975 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 AC095050.2-201ENST00000510748 1458 ntBASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC112Q8NEF3 MAPK10-372ENST00000641954 3413 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 AC005261.4-201ENST00000600047 1385 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 AL133412.1-201ENST00000380194 2992 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 Y_RNA.126-201ENST00000363382 111 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 RNA5SP366-201ENST00000365454 123 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 MIR184-201ENST00000384962 84 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 AL391417.1-201ENST00000404100 426 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 SEC63P1-201ENST00000425785 1258 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 RPS20P1-201ENST00000434853 354 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 AL353597.2-202ENST00000434901 373 ntBASIC4.28□□□□□ -1.72
CCDC112Q8NEF3 RPS4XP4-201ENST00000443195 763 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms