Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 OR52E6-202ENST00000379946 954 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 MIR3065-201ENST00000390137 79 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 PPIAP31-201ENST00000405422 495 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 SNORA11F-201ENST00000408237 128 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 RPS12P23-201ENST00000419579 400 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 RPL7P2-201ENST00000427639 268 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 ARL5AP2-201ENST00000444698 533 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 YWHAQP9-201ENST00000445891 512 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC096992.1-201ENST00000459808 709 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC108475.1-201ENST00000507880 950 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC103833.1-201ENST00000517442 172 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 HMGB1P19-201ENST00000517578 577 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 PTP4A1P6-201ENST00000531034 478 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AP000919.1-202ENST00000581139 1264 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC040174.2-201ENST00000602701 465 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 SNX18P1Y-201ENST00000616231 511 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AC099669.2-201ENST00000616549 437 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AP001273.1-201ENST00000624493 3152 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 USP44-208ENST00000552440 1818 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 DCAF13P3-201ENST00000561147 1334 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 AL136964.1-201ENST00000622038 2990 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 RNA5SP391-201ENST00000363456 119 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 RNU1-132P-201ENST00000364300 164 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 RNA5SP171-201ENST00000391071 115 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 RPS20P14-201ENST00000412545 360 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AL139095.3-201ENST00000419672 1203 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC108751.2-201ENST00000469993 231 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC008562.1-201ENST00000521763 330 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC025918.2-201ENST00000558683 763 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC079587.1-201ENST00000603846 277 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 IMMP1LP1-201ENST00000605170 488 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 MIR1264-201ENST00000616374 69 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 MIR6891-201ENST00000618788 93 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC112484.5-201ENST00000624189 228 ntBASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HDDC3Q8N4P3 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.42□□□□□ -1.7
HDDC3Q8N4P3 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.42□□□□□ -1.7
HDDC3Q8N4P3 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HDDC3Q8N4P3 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HDDC3Q8N4P3 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.42□□□□□ -1.7
HDDC3Q8N4P3 AC004987.3-201ENST00000413879 771 ntBASIC4.42□□□□□ -1.7
HDDC3Q8N4P3 AC114814.2-201ENST00000419195 485 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms