Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 MIR7641-1-201ENST00000627518 61 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC140479.6-201ENST00000633535 357 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC008725.1-201ENST00000605123 2263 ntBASIC3.79□□□□□ -1.8
SKA3Q8IX90 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
SKA3Q8IX90 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.79□□□□□ -1.8
SKA3Q8IX90 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 RNU1-15P-201ENST00000353977 144 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 RNU6-304P-201ENST00000364855 107 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 HMGB1P10-201ENST00000395823 563 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 MIR1183-201ENST00000408856 89 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 RNU2-17P-201ENST00000410290 190 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 NRBF2P2-201ENST00000413087 861 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AMMECR1LP1-201ENST00000415152 841 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC092647.1-201ENST00000420654 287 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 EIF1P3-201ENST00000423841 334 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 RPL12P34-201ENST00000424532 479 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 CEACAMP1-201ENST00000434624 1035 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 MTCYBP21-201ENST00000443300 1113 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC005229.2-201ENST00000456995 399 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 RPL7P48-201ENST00000461513 746 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 NPM1P17-201ENST00000479221 602 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC010627.1-201ENST00000503819 1294 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC112198.3-201ENST00000505950 441 ntTSL 3 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC008628.1-201ENST00000508663 265 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 RNU6-1102P-201ENST00000516149 96 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 RN7SKP141-201ENST00000516167 338 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 PHBP17-201ENST00000528576 541 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 TRAV8-5-201ENST00000537369 341 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 CBX3P5-201ENST00000552017 521 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AL109741.3-201ENST00000561748 592 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC124068.1-201ENST00000563131 678 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 HNRNPCP4-201ENST00000571636 900 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 MIR548Y-201ENST00000582739 110 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 AL445493.3-201ENST00000619568 477 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 AC019278.1-201ENST00000623516 479 ntBASIC3.78□□□□□ -1.8
SKA3Q8IX90 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.78□□□□□ -1.8
SKA3Q8IX90 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
SKA3Q8IX90 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.81
SKA3Q8IX90 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.81
SKA3Q8IX90 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 MTND4P10-201ENST00000446199 1363 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 Y_RNA.110-201ENST00000363220 99 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RNU6-252P-201ENST00000363232 107 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RN7SKP44-201ENST00000363602 316 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RNA5SP322-201ENST00000363617 119 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RNA5SP509-201ENST00000364577 119 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 SNORA62.2-201ENST00000364672 152 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC3.77□□□□□ -1.81
SKA3Q8IX90 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 RNU4-31P-201ENST00000384211 141 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RNU6-146P-201ENST00000384602 108 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC105402.1-201ENST00000413336 545 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 XKRYP4-201ENST00000414395 483 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL592293.2-201ENST00000422292 996 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL121882.1-201ENST00000422893 417 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL157831.1-201ENST00000426134 473 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.77□□□□□ -1.81
SKA3Q8IX90 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AC074367.1-201ENST00000438685 1125 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 CBX1P1-201ENST00000440184 427 ntBASIC3.77□□□□□ -1.81
SKA3Q8IX90 AL512326.1-201ENST00000443050 721 ntBASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms