Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
PRKDCP78527 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PRKDCP78527 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 PPP1R11P1-201ENST00000486095 376 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 YWHAEP4-201ENST00000505390 198 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC2.61□□□□□ -1.99
PRKDCP78527 MIR8069-1-201ENST00000616627 86 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 MIR8069-2-201ENST00000621412 86 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PRKDCP78527 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 SPATA31D2P-201ENST00000429999 4388 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
PRKDCP78527 DBIP2-201ENST00000419076 262 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 EIF4A2P3-201ENST00000525903 1055 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 VN1R78P-201ENST00000597393 564 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 AC239868.2-201ENST00000564237 4527 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 AC005831.1-201ENST00000624384 1697 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 AC068254.2-201ENST00000623938 3577 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC2.6□□□□□ -1.99
PRKDCP78527 EEF1A1P42-201ENST00000613436 1331 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 BTF3P9-201ENST00000418784 283 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 HSPE1P27-201ENST00000430808 296 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 AL513175.1-201ENST00000431492 780 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 RPL7P38-201ENST00000488396 739 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 CYCSP28-201ENST00000534284 321 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC2.6□□□□□ -1.99
PRKDCP78527 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
PRKDCP78527 U4.6-201ENST00000621618 127 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC2.6□□□□□ -1.99
PRKDCP78527 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC2.6□□□□□ -1.99
PRKDCP78527 AF117829.1-206ENST00000621883 3802 ntBASIC2.6□□□□□ -1.99
PRKDCP78527 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC2.6□□□□□ -1.99
PRKDCP78527 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
PRKDCP78527 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC2.59□□□□□ -1.99
PRKDCP78527 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC2.59□□□□□ -1.99
PRKDCP78527 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC2.59□□□□□ -1.99
PRKDCP78527 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.59□□□□□ -1.99
PRKDCP78527 FRG1CP-201ENST00000358464 769 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 RNU1-140P-201ENST00000365040 165 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 TXNP1-201ENST00000441872 371 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AP001207.2-201ENST00000519490 539 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC2.59□□□□□ -1.99
PRKDCP78527 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC2.59□□□□□ -1.99
PRKDCP78527 CKS1BP3-201ENST00000600888 237 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AC073657.2-201ENST00000605661 303 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AC234782.5-201ENST00000617723 324 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC2.59□□□□□ -1.99
PRKDCP78527 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC2.59□□□□□ -1.99
PRKDCP78527 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 INTS6-202ENST00000398119 7041 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
PRKDCP78527 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
PRKDCP78527 PHACTR2P1-201ENST00000605639 1414 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AL139281.1-201ENST00000422120 335 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC2.59□□□□□ -1.99
PRKDCP78527 HMGB3P16-201ENST00000508037 287 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 IGKV1OR2-1-201ENST00000514060 354 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 ATP5F1P5-201ENST00000526403 760 ntBASIC2.59□□□□□ -1.99
PRKDCP78527 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC2.59□□□□□ -1.99
PRKDCP78527 AC097504.1-201ENST00000515103 2415 ntBASIC2.59□□□□□ -2
PRKDCP78527 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
PRKDCP78527 AL117339.4-201ENST00000608335 7063 ntBASIC2.59□□□□□ -2
PRKDCP78527 AC093535.2-201ENST00000624769 2326 ntBASIC2.59□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms