Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC3.97□□□□□ -1.77
PKNOX1P55347 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
PKNOX1P55347 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.77
PKNOX1P55347 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.96□□□□□ -1.78
PKNOX1P55347 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PKNOX1P55347 SNORA60-201ENST00000362396 134 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
PKNOX1P55347 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
PKNOX1P55347 RPS4XP9-201ENST00000405151 780 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 RNA5SP239-201ENST00000410218 129 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC3.96□□□□□ -1.78
PKNOX1P55347 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.96□□□□□ -1.78
PKNOX1P55347 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.96□□□□□ -1.78
PKNOX1P55347 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC3.96□□□□□ -1.78
PKNOX1P55347 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.96□□□□□ -1.78
PKNOX1P55347 COX6B1P7-201ENST00000430845 235 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 BTF3P10-201ENST00000433415 495 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 ATP5HP2-201ENST00000433885 485 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 MTCO1P52-201ENST00000433928 531 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC096638.2-201ENST00000434965 711 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 ACTR3P2-201ENST00000439585 1257 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 YWHAQP9-201ENST00000445891 512 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.96□□□□□ -1.78
PKNOX1P55347 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC3.96□□□□□ -1.78
PKNOX1P55347 TPRKBP1-201ENST00000456243 481 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.96□□□□□ -1.78
PKNOX1P55347 RFPL1S-203ENST00000539579 330 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 NOP56P3-201ENST00000549457 385 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC3.96□□□□□ -1.78
PKNOX1P55347 PSMB7P1-201ENST00000556349 514 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC022968.1-201ENST00000567372 442 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
PKNOX1P55347 MRPS35P3-201ENST00000603189 709 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AL355802.4-201ENST00000607635 548 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.96□□□□□ -1.78
PKNOX1P55347 AC011472.4-201ENST00000615848 491 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC123768.4-201ENST00000616244 701 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 RN7SL722P-201ENST00000617780 284 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 RN7SL565P-201ENST00000618246 284 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC139769.3-201ENST00000618383 175 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AL162233.1-201ENST00000620014 944 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AC007342.8-201ENST00000623278 678 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC3.96□□□□□ -1.78
PKNOX1P55347 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.96□□□□□ -1.78
PKNOX1P55347 AC095050.2-201ENST00000510748 1458 ntBASIC3.96□□□□□ -1.78
PKNOX1P55347 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.78
PKNOX1P55347 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.96□□□□□ -1.78
PKNOX1P55347 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC009951.1-201ENST00000623674 2614 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 SNORD35B-201ENST00000363660 87 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 MIR1251-201ENST00000408552 70 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC073464.3-201ENST00000422564 712 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 CR848007.2-201ENST00000424918 787 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 USP12PY-201ENST00000427677 1064 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AL358472.1-201ENST00000431295 329 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 MTND2P21-201ENST00000436242 1042 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 CBX1P1-201ENST00000440184 427 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AC239809.1-201ENST00000450470 217 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 HMGB1P26-201ENST00000452520 628 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 HESX1-202ENST00000473921 757 ntTSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 MTND6P6-201ENST00000478031 263 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AC013356.1-201ENST00000489027 564 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AC092045.1-201ENST00000495716 1231 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 KRT19P6-201ENST00000510983 209 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.95□□□□□ -1.78
PKNOX1P55347 NARSP2-201ENST00000518524 679 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.95□□□□□ -1.78
PKNOX1P55347 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC137768.1-201ENST00000549998 553 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC110743.1-201ENST00000584870 478 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 MIR5684-201ENST00000585074 65 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC234771.5-201ENST00000600161 514 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AL356218.2-201ENST00000605264 187 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC104307.1-201ENST00000616142 196 ntBASIC3.95□□□□□ -1.78
PKNOX1P55347 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.95□□□□□ -1.78
PKNOX1P55347 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.95□□□□□ -1.78
PKNOX1P55347 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.95□□□□□ -1.78
PKNOX1P55347 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms