Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA3P55318 RPS26P13-201ENST00000419030 330 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 OSTCP5-201ENST00000425293 453 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA3P55318 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 AL138878.2-201ENST00000440581 1241 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 TXNP1-201ENST00000441872 371 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA3P55318 AC073648.4-201ENST00000442655 781 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 RPL7P32-201ENST00000457119 744 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AP002371.1-201ENST00000463604 433 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 SNRPGP3-201ENST00000469405 227 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 OR52A4P-201ENST00000472867 958 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 CYCSP20-201ENST00000473154 315 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC092451.1-201ENST00000480211 153 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 UBE2CP3-201ENST00000502715 450 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 PCBP2P3-201ENST00000509726 843 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC008958.1-201ENST00000511047 682 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC2.89□□□□□ -1.95
FOXA3P55318 AC010476.1-201ENST00000519111 851 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC008489.1-201ENST00000524271 483 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AP000676.2-201ENST00000529711 301 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA3P55318 TVP23BP1-201ENST00000557500 617 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA3P55318 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC2.89□□□□□ -1.95
FOXA3P55318 MIR3186-201ENST00000577404 85 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 MIR4646-201ENST00000580775 63 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC2.89□□□□□ -1.95
FOXA3P55318 AC011492.1-201ENST00000600023 315 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 SNX6P1-201ENST00000601728 1224 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC068790.7-201ENST00000602347 528 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AL592436.1-201ENST00000605135 558 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC034236.3-201ENST00000605999 461 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AL512624.1-201ENST00000613638 469 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AL589935.2-201ENST00000616471 1231 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 MIR6886-201ENST00000619864 61 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC068870.2-201ENST00000620635 389 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA3P55318 SPATA2P1-201ENST00000431223 2055 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC2.89□□□□□ -1.95
FOXA3P55318 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 SEPT7P7-201ENST00000420492 1301 ntBASIC2.89□□□□□ -1.95
FOXA3P55318 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
FOXA3P55318 USP44-208ENST00000552440 1818 ntTSL 5 BASIC2.89□□□□□ -1.95
FOXA3P55318 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
FOXA3P55318 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 AP001148.1-201ENST00000624124 2359 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 AC073073.2-201ENST00000609827 2578 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 RN7SKP229-201ENST00000410465 302 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 SNORA57.3-201ENST00000411095 141 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 CYP3A43-205ENST00000415413 990 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 AC096644.3-201ENST00000416788 338 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL049610.1-201ENST00000423374 372 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 MOB1AP1-201ENST00000430903 535 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 MTCO1P52-201ENST00000433928 531 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 RPS4XP4-201ENST00000443195 763 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
FOXA3P55318 AC016724.1-201ENST00000453215 421 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AC009963.2-201ENST00000453431 138 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA3P55318 RPL38P1-201ENST00000460914 211 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 RPL23AP14-201ENST00000468281 468 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AC084198.1-201ENST00000477747 402 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 OR5M14P-201ENST00000506803 618 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 MTND5P21-201ENST00000531961 522 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 AC008147.3-201ENST00000548666 354 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AC091516.1-201ENST00000549191 703 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.88□□□□□ -1.95
FOXA3P55318 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC2.88□□□□□ -1.95
FOXA3P55318 AP001180.3-201ENST00000582221 145 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL161729.3-201ENST00000603533 673 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL137849.1-201ENST00000604767 169 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC2.88□□□□□ -1.95
FOXA3P55318 AC016769.4-201ENST00000616893 535 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 MIR6729-201ENST00000618194 65 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 AL445528.2-201ENST00000620582 470 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 AC138649.5-201ENST00000637456 137 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
FOXA3P55318 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC2.88□□□□□ -1.95
FOXA3P55318 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC2.88□□□□□ -1.95
FOXA3P55318 DCAF13P3-201ENST00000561147 1334 ntBASIC2.88□□□□□ -1.95
FOXA3P55318 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms