Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 CDV3-208ENST00000511392 554 ntTSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 IGJP1-201ENST00000522682 475 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.81□□□□□ -1.64
PTPN9P43378 OR4U1P-201ENST00000554958 912 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.81□□□□□ -1.64
PTPN9P43378 AC245036.5-201ENST00000596330 847 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AC008536.1-201ENST00000602872 669 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AC133552.5-201ENST00000604266 540 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 SNORD91B-202ENST00000608459 222 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AP000484.1-201ENST00000620067 1252 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AP002782.1-201ENST00000623107 614 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AC015726.3-201ENST00000624501 418 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 AL391684.1-202ENST00000641293 1636 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 AC022031.1-201ENST00000585985 2593 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.81□□□□□ -1.64
PTPN9P43378 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 C2orf73-208ENST00000615983 1376 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 AC009313.2-201ENST00000417893 1941 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC108751.5-201ENST00000492880 1336 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.8□□□□□ -1.64
PTPN9P43378 RNU6-304P-201ENST00000364855 107 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 SNORA71.2-201ENST00000364941 134 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 RNA5SP397-201ENST00000391323 118 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 MTCO2P31-201ENST00000402702 684 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 RBMY2KP-201ENST00000418221 992 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.8□□□□□ -1.64
PTPN9P43378 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 AL049745.1-201ENST00000433953 286 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 NANOGP2-201ENST00000435391 727 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC234064.1-201ENST00000436312 247 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AL031663.1-201ENST00000437445 219 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 NPM1P13-201ENST00000452663 865 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 AC010326.1-201ENST00000462726 602 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 XACT-201ENST00000468762 497 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 RPL23AP71-201ENST00000470966 469 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC011037.1-201ENST00000483964 558 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC005912.1-201ENST00000495392 255 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 RPS4XP18-201ENST00000495480 763 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 RNA5SP446-201ENST00000515955 82 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 MTND2P38-201ENST00000522536 667 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 DUXAP5-201ENST00000529668 529 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 MTCO2P15-201ENST00000532655 656 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC023538.1-201ENST00000534576 736 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.8□□□□□ -1.64
PTPN9P43378 AC068714.1-201ENST00000559623 800 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC090695.1-201ENST00000561269 1222 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC009097.3-201ENST00000563557 1018 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.8□□□□□ -1.64
PTPN9P43378 MIR4270-201ENST00000581799 70 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 HMGB2P1-201ENST00000591146 634 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 NIFKP6-201ENST00000598115 845 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 ELOCP35-201ENST00000604289 336 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC025588.2-201ENST00000604851 466 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC099676.1-201ENST00000608886 657 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 AC021755.4-201ENST00000616620 456 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 CDRT1-208ENST00000630868 794 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC4.8□□□□□ -1.64
PTPN9P43378 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.8□□□□□ -1.64
PTPN9P43378 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
PTPN9P43378 MAPK10-320ENST00000641462 6696 ntBASIC4.8□□□□□ -1.64
PTPN9P43378 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PTPN9P43378 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PTPN9P43378 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PTPN9P43378 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.8□□□□□ -1.64
PTPN9P43378 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PTPN9P43378 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.79□□□□□ -1.64
PTPN9P43378 MTND4P8-201ENST00000514997 1362 ntBASIC4.79□□□□□ -1.64
PTPN9P43378 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
PTPN9P43378 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms