Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC097374.1-203ENST00000400783 485 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 MIR1911-201ENST00000410783 80 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 RNU4-27P-201ENST00000410889 139 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 RNU2-6P-201ENST00000411404 190 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 UBTFL3-201ENST00000418934 1024 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC023128.2-201ENST00000420880 1223 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC005189.1-201ENST00000431286 310 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 ARL5AP2-201ENST00000444698 533 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 EIF2S2P2-201ENST00000447161 982 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 RPL35AP15-201ENST00000468042 339 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 UBTFL6-201ENST00000477929 1024 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 RN7SL812P-201ENST00000493791 279 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC025674.1-201ENST00000507074 324 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC133963.2-201ENST00000513686 578 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 COX6B1P6-201ENST00000522347 255 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC022790.1-201ENST00000522872 204 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC100770.1-201ENST00000532310 322 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 PDCD5P1-201ENST00000543528 309 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC104229.1-201ENST00000561364 255 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC106734.1-201ENST00000568646 663 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 MIR3908-201ENST00000579798 126 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC090948.1-201ENST00000607464 549 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 STMN1P1-201ENST00000617809 440 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AL035461.2-201ENST00000619201 524 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 FP325313.1-201ENST00000638228 703 ntBASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
ATG4BQ9Y4P1 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC006971.1-201ENST00000407916 4486 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 SNORA62-201ENST00000365493 153 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 ATF1P1-201ENST00000406040 927 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 RNU2-65P-201ENST00000410162 185 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AL158825.1-201ENST00000414735 521 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AL592293.2-201ENST00000422292 996 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 RPL30P3-201ENST00000424262 333 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 VN1R42P-201ENST00000424651 344 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AL031736.2-201ENST00000426573 787 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC093422.3-201ENST00000428506 305 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 RPL7P33-201ENST00000444159 742 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AL352979.3-201ENST00000553515 247 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC015911.5-201ENST00000587076 451 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC113403.1-201ENST00000604910 193 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AL021997.2-201ENST00000615674 271 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 MIR6758-201ENST00000620653 63 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC095038.2-201ENST00000621464 1070 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 BMS1P21-201ENST00000634565 365 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC008432.1-201ENST00000615912 1320 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 MTND4P26-201ENST00000415971 1359 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 AC017007.4-201ENST00000503353 1352 ntBASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.12□□□□□ -1.75
ATG4BQ9Y4P1 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
ATG4BQ9Y4P1 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
ATG4BQ9Y4P1 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms