Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC106900.2-201ENST00000604994 317 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC098614.4-201ENST00000607601 462 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AL158209.2-201ENST00000619266 216 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 DNAJC19P6-201ENST00000401853 280 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC096921.1-201ENST00000411661 375 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 CTSL3P-202ENST00000412179 788 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 TRAPPC2P8-201ENST00000440676 396 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 OR6C5P-201ENST00000452388 923 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 RPS27AP2-201ENST00000457576 465 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC022215.1-201ENST00000481770 362 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC073610.1-201ENST00000489971 396 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 RNU6-513P-201ENST00000516104 104 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 RN7SKP141-201ENST00000516167 338 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 CASC19-203ENST00000523510 575 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 OR5AQ1P-201ENST00000527596 927 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC068305.2-201ENST00000550567 1205 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 PSMA3P-201ENST00000555485 635 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AL133457.1-201ENST00000564251 987 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AL138895.2-201ENST00000603019 178 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AL050343.2-201ENST00000607338 280 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AL122125.1-201ENST00000616999 600 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 ATE1-AS1-202ENST00000636460 506 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AL645937.1-201ENST00000641739 1652 ntBASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.41□□□□□ -1.38
CCDC39Q9UFE4 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AL159987.1-201ENST00000347911 293 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 Y_RNA.18-201ENST00000362461 102 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 RNA5SP241-201ENST00000391326 114 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 OR7E101P-201ENST00000400428 513 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 RN7SKP56-201ENST00000410513 331 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC007390.1-201ENST00000415722 356 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC234781.4-201ENST00000419384 244 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AL035458.1-201ENST00000433096 585 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC012512.1-201ENST00000446594 718 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 FAR2P1-206ENST00000449736 709 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 RN7SL72P-201ENST00000460697 269 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC009120.1-201ENST00000493458 473 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC079395.1-201ENST00000510981 262 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AC098976.1-201ENST00000513014 541 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 IGHV3-32-201ENST00000519182 355 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 OR8A2P-201ENST00000528631 952 ntBASIC6.4□□□□□ -1.38
CCDC39Q9UFE4 AP002453.2-201ENST00000533503 320 ntBASIC6.4□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms