Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
EBF3Q9H4W6 RNU6-1214P-201ENST00000363650 109 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 RNA5SP447-201ENST00000363749 119 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AL049693.1-201ENST00000402760 611 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 RNU4-22P-201ENST00000411058 166 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AL445183.3-201ENST00000414168 502 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC004690.1-201ENST00000418216 328 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC008173.1-201ENST00000418901 264 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 DEFB130D-201ENST00000426866 237 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 MTND2P19-201ENST00000449129 1012 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AL133217.1-201ENST00000450980 425 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC022795.1-201ENST00000473808 480 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 RPS3AP22-201ENST00000488297 769 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC073073.1-201ENST00000493920 463 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 IGBP1P5-201ENST00000507524 1000 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC093752.1-206ENST00000511823 336 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 PYM1-205ENST00000547925 499 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 MTND4P33-201ENST00000556706 766 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC093249.4-201ENST00000564755 259 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 ATP5J2P6-201ENST00000565203 266 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 RN7SL652P-201ENST00000577769 300 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 SS18L2P2-201ENST00000583960 235 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC068790.6-201ENST00000602558 258 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 MTCO2P22-201ENST00000603246 681 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC067838.1-201ENST00000606064 577 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC245100.7-201ENST00000609678 442 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AL360219.1-201ENST00000610230 366 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC005332.10-201ENST00000612725 619 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 OR8G7P-201ENST00000616658 848 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC074140.1-201ENST00000621617 208 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC016717.3-201ENST00000624730 554 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AC108751.5-201ENST00000492880 1336 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 AL034370.1-201ENST00000397254 1590 ntBASIC4.9□□□□□ -1.63
EBF3Q9H4W6 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
EBF3Q9H4W6 HSPD1P11-201ENST00000508643 1702 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 SNORD56.4-201ENST00000363883 71 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 Y_RNA.201-201ENST00000364052 96 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 RNU6-31P-201ENST00000384388 108 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 RNU6-192P-201ENST00000391253 100 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 RNA5SP397-201ENST00000391323 118 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 RPL26P37-201ENST00000411983 438 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AC022028.1-201ENST00000412054 408 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AL591848.1-201ENST00000413092 322 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 USP9YP26-201ENST00000421008 661 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 CHIAP3-201ENST00000423668 1133 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AL732292.1-201ENST00000426692 226 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AL365396.1-201ENST00000430854 671 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AC092162.1-201ENST00000432828 434 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AC118469.1-201ENST00000442943 488 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 NPM1P49-201ENST00000448027 714 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 USP9YP25-201ENST00000457708 443 ntBASIC4.89□□□□□ -1.63
EBF3Q9H4W6 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.89□□□□□ -1.63
EBF3Q9H4W6 AC026414.1-201ENST00000504046 698 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 156.8 ms