Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 SNORA44-201ENST00000384584 132 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 AC103783.1-201ENST00000520506 373 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 IGHV3-29-201ENST00000604817 344 ntBASIC3.55□□□□□ -1.84
VPS13AQ96RL7 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
VPS13AQ96RL7 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 IFNG-201ENST00000229135 1218 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 CKS1BP3-201ENST00000600888 237 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 AC009464.1-201ENST00000615731 469 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 HSPD1P14-201ENST00000432666 1618 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 RNA5SP187-201ENST00000384400 119 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 NACAP7-201ENST00000407371 609 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 RN7SKP97-201ENST00000410966 333 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 AC010740.1-201ENST00000417035 684 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 AC073522.1-201ENST00000483312 377 ntBASIC3.54□□□□□ -1.84
VPS13AQ96RL7 NELL2-211ENST00000548826 559 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
VPS13AQ96RL7 Z99755.1-201ENST00000414048 380 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 DBIP2-201ENST00000419076 262 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 NRBF2P5-201ENST00000603087 788 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AC067945.1-201ENST00000342609 618 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AL359643.1-201ENST00000404109 423 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AC090602.1-201ENST00000469695 252 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AC006445.1-201ENST00000491925 405 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 OR2AS2P-201ENST00000606902 342 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 HSP90AA4P-202ENST00000506915 2228 ntBASIC3.53□□□□□ -1.84
VPS13AQ96RL7 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.53□□□□□ -1.84
VPS13AQ96RL7 LINC00845-201ENST00000417931 696 ntTSL 2 BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AL603910.1-201ENST00000423099 370 ntTSL 3 BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 NPM1P25-201ENST00000429734 854 ntBASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AC097262.1-201ENST00000452559 548 ntBASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AC002069.2-201ENST00000603580 883 ntBASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AP003392.5-201ENST00000607857 415 ntBASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AC112503.1-201ENST00000608436 391 ntBASIC3.53□□□□□ -1.85
VPS13AQ96RL7 AL590240.3-201ENST00000621416 943 ntBASIC3.53□□□□□ -1.85
VPS13AQ96RL7 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.53□□□□□ -1.85
VPS13AQ96RL7 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 AC005183.1-201ENST00000603687 1979 ntBASIC3.52□□□□□ -1.85
VPS13AQ96RL7 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 AC010095.1-201ENST00000443543 144 ntBASIC3.52□□□□□ -1.85
VPS13AQ96RL7 AC108941.1-201ENST00000502853 530 ntBASIC3.52□□□□□ -1.85
VPS13AQ96RL7 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC3.52□□□□□ -1.85
VPS13AQ96RL7 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms