Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AL357515.1-201ENST00000402967 542 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 RNA5SP113-201ENST00000410486 84 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 RNA5SP345-201ENST00000410646 108 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 PDSS1P1-201ENST00000422953 1114 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 RPL21P43-201ENST00000425440 472 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 RPL23AP2-201ENST00000471227 466 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 HPRT1P2-201ENST00000505250 544 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC027338.1-201ENST00000514840 825 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 RNU6-488P-201ENST00000515918 99 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 MYL12AP1-201ENST00000518490 515 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC104115.2-201ENST00000523026 687 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 MORF4L1P3-201ENST00000525966 950 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 SNORA74C-1-201ENST00000580726 201 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AL512782.1-201ENST00000603093 364 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 YWHAQP7-201ENST00000603536 658 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 AL669942.2-201ENST00000620352 697 ntBASIC4.53□□□□□ -1.68
VMP1Q96GC9 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
VMP1Q96GC9 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
VMP1Q96GC9 MTCO1P6-201ENST00000481192 1384 ntBASIC4.53□□□□□ -1.69
VMP1Q96GC9 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VMP1Q96GC9 EOGT-210ENST00000615922 1931 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 RNU6-1243P-201ENST00000364028 107 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 VDAC1P9-201ENST00000412766 841 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC069285.2-201ENST00000440210 275 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 RPS20P32-201ENST00000456044 356 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC078857.1-201ENST00000469870 667 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AP000893.1-201ENST00000474462 794 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 SETP6-201ENST00000479329 568 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC105233.1-201ENST00000498840 781 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC112518.2-201ENST00000508565 425 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 RNA5SP73-201ENST00000516744 108 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 OR4C2P-201ENST00000530855 1064 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC079075.1-201ENST00000559543 878 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 UBE2FP2-201ENST00000566646 462 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC091042.1-201ENST00000579213 173 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AL391358.1-201ENST00000605342 190 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC007497.1-201ENST00000610421 561 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AL356118.1-201ENST00000635272 1078 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 AC139713.2-215ENST00000641428 5037 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.52□□□□□ -1.69
VMP1Q96GC9 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VMP1Q96GC9 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
VMP1Q96GC9 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
VMP1Q96GC9 Z98755.1-201ENST00000407015 1384 ntBASIC4.52□□□□□ -1.69
VMP1Q96GC9 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VMP1Q96GC9 EXOC5P1-201ENST00000510543 1969 ntBASIC4.51□□□□□ -1.69
VMP1Q96GC9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 NCLP2-201ENST00000416078 1462 ntBASIC4.51□□□□□ -1.69
VMP1Q96GC9 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
VMP1Q96GC9 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
VMP1Q96GC9 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 PIH1D2-201ENST00000280350 1241 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 RNU6-609P-201ENST00000365459 107 ntBASIC4.51□□□□□ -1.69
VMP1Q96GC9 RNU6-481P-201ENST00000384194 107 ntBASIC4.51□□□□□ -1.69
VMP1Q96GC9 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
VMP1Q96GC9 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 AL355379.1-201ENST00000405542 640 ntBASIC4.51□□□□□ -1.69
VMP1Q96GC9 HYKK-202ENST00000408962 847 ntTSL 5 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.51□□□□□ -1.69
VMP1Q96GC9 MTATP6P11-201ENST00000428071 670 ntBASIC4.51□□□□□ -1.69
VMP1Q96GC9 USP9YP9-201ENST00000429406 715 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms