Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AL512646.1-201ENST00000269395 1077 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RNU1-15P-201ENST00000353977 144 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RNU6-1293P-201ENST00000384077 107 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 MIR513A2-201ENST00000385249 127 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 CYB5AP4-201ENST00000396692 399 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 PRRC2CP1-201ENST00000404428 159 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 BTBD10P2-201ENST00000404779 676 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 MIR1250-201ENST00000408098 113 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 TATDN1P1-201ENST00000414123 891 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RAC1P3-201ENST00000416129 580 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 UBTFL3-201ENST00000418934 1024 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 TRIM60P13-201ENST00000432350 1283 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RPL7P11-201ENST00000437586 658 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 snoU13.7-201ENST00000459220 104 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RPL23AP56-201ENST00000460778 453 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC063943.1-201ENST00000465434 453 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC025181.1-201ENST00000477507 416 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RN7SL481P-201ENST00000477764 299 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 UBTFL6-201ENST00000477929 1024 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 HMGB3P14-201ENST00000494195 599 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RPS6P4-201ENST00000494693 758 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 IFITM8P-201ENST00000522529 394 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 CIR1P1-201ENST00000524055 1133 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 CYP4A43P-201ENST00000568156 121 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 MIR5699-201ENST00000578903 90 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AF230666.2-201ENST00000602328 725 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC019193.2-201ENST00000610012 634 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 MIR6780A-201ENST00000615089 68 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 RNU6-156P-201ENST00000621869 107 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 U6.107-201ENST00000637108 79 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AL592494.2-201ENST00000425455 1548 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 AC016588.2-201ENST00000632484 3021 ntBASIC4.19□□□□□ -1.74
ZNF540Q8NDQ6 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC068254.2-201ENST00000623938 3577 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 SNORA31-201ENST00000362607 130 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 RNA5SP113-201ENST00000410486 84 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC016397.1-201ENST00000412463 242 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 GTF2IP5-201ENST00000414608 731 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 RPL26P29-201ENST00000415623 438 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 EI24P1-201ENST00000416584 867 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC119751.6-201ENST00000416712 186 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 CR848007.2-201ENST00000424918 787 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 OR4F13P-201ENST00000428478 931 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 OR51AB1P-201ENST00000429046 620 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AL353748.1-201ENST00000440753 474 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AL513533.1-201ENST00000453728 415 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 RPL9P32-201ENST00000464118 620 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC092451.1-201ENST00000480211 153 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC011005.3-201ENST00000491624 395 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC068305.1-201ENST00000497406 726 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 IGLVIV-53-201ENST00000520107 367 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 C1DP5-201ENST00000525775 383 ntBASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.18□□□□□ -1.74
ZNF540Q8NDQ6 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms