Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL353692.2-201ENST00000407054 335 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 TATDN1P1-201ENST00000414123 891 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 CYP4F29P-201ENST00000420685 446 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 RPS26P2-201ENST00000440331 348 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 RPL7P33-201ENST00000444159 742 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC069540.1-201ENST00000446320 988 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 MTND2P3-201ENST00000452458 470 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 MTND2P6-201ENST00000455337 1030 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC108156.1-201ENST00000507849 481 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 RNA5SP360-201ENST00000516555 118 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC233266.2-201ENST00000567067 528 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC006130.2-201ENST00000586202 326 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC022916.3-201ENST00000592961 742 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC135178.6-201ENST00000605314 398 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC011374.2-201ENST00000607135 526 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC004775.1-201ENST00000607389 753 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC006133.1-201ENST00000617106 264 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 uc_338.13-201ENST00000618243 179 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AL645927.2-201ENST00000618350 349 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC243756.2-201ENST00000618406 463 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AC022031.1-201ENST00000585985 2593 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 AL049737.1-201ENST00000413920 1403 ntBASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
HDDC3Q8N4P3 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 U3.15-201ENST00000365398 212 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 ATP5F1P3-201ENST00000397213 657 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AL078604.1-201ENST00000404609 466 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 RN7SKP199-201ENST00000410325 305 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 ARL2BPP3-201ENST00000421226 480 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 BX119904.1-201ENST00000432026 348 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC023347.2-201ENST00000433994 462 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 ARL4AP4-201ENST00000434170 518 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 VN1R34P-201ENST00000447387 883 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 TRBV8-2-201ENST00000475637 270 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 S100A11P1-201ENST00000477525 312 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 RN7SL132P-201ENST00000478131 296 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 HMGB1P21-201ENST00000502313 581 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC110792.2-201ENST00000510278 224 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 CIR1P1-201ENST00000524055 1133 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC091178.1-203ENST00000584586 279 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC023762.1-201ENST00000603280 584 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC115621.1-201ENST00000604653 858 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AC008966.2-201ENST00000606157 453 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 OR8B1P-202ENST00000641132 1178 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 EIF2AP4-201ENST00000424793 1781 ntBASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HDDC3Q8N4P3 AL672167.1-205ENST00000641112 3080 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 NXPH1-205ENST00000602349 1953 ntBASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HDDC3Q8N4P3 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms