Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC231759.1-201ENST00000616455 597 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC021106.3-201ENST00000623925 531 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AL683826.1-201ENST00000624104 627 ntBASIC2.28□□□□□ -2.04
LINC00643Q86TS7 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC2.28□□□□□ -2.04
LINC00643Q86TS7 AC093831.2-201ENST00000624393 3427 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC025125.1-201ENST00000624743 1922 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 KRTAP27-1-201ENST00000382835 682 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 HIST1H2BPS2-201ENST00000402707 340 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 EEF1B2P8-201ENST00000414101 671 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 RPL32P35-201ENST00000415214 394 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 HMGB3P20-201ENST00000417997 600 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL157831.1-201ENST00000426134 473 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC104332.2-201ENST00000429959 156 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 SCP2-206ENST00000430330 938 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 NFYAP1-201ENST00000431953 972 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 LINC01598-201ENST00000432067 460 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 NRBF2P3-201ENST00000432731 865 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC006011.1-201ENST00000442758 349 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 LINC01370-202ENST00000445606 731 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 RPL21P8-201ENST00000465083 535 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 RN7SL499P-201ENST00000481141 276 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 UBA52P7-201ENST00000486088 380 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 RNA5SP271-201ENST00000516700 88 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MIR2276-201ENST00000516886 89 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC104986.1-201ENST00000517978 436 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC090150.2-201ENST00000521869 815 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AP000827.1-201ENST00000527814 258 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL121766.1-201ENST00000547436 487 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 RN7SL690P-201ENST00000582087 240 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MIR4664-201ENST00000583819 71 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MIR5684-201ENST00000585074 65 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC006557.5-201ENST00000603126 811 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AL163642.2-201ENST00000604722 1019 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MIR6070-201ENST00000613967 103 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 AC092447.7-201ENST00000422212 1621 ntBASIC2.27□□□□□ -2.05
LINC00643Q86TS7 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
LINC00643Q86TS7 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 XKR3-201ENST00000331428 1690 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RNA5SP427-201ENST00000365323 119 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AC009804.1-201ENST00000400949 179 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 PVALB-202ENST00000404171 422 ntTSL 2 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 MIR1231-201ENST00000408101 92 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 SNORA11F-201ENST00000408237 128 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RSU1P3-201ENST00000412878 835 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RPL23AP82-202ENST00000427528 469 ntBASIC2.26□□□□□ -2.05
LINC00643Q86TS7 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC2.26□□□□□ -2.05
LINC00643Q86TS7 RPSAP32-201ENST00000432681 526 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms