Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC009303.3-201ENST00000591103 736 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AC005972.3-201ENST00000606304 481 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AL596275.2-204ENST00000641628 552 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 AL596275.2-206ENST00000641957 626 ntBASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
CCDC88AQ3V6T2 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 RNU1-108P-201ENST00000362556 161 ntBASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 MIR1251-201ENST00000408552 70 ntBASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 AC007599.1-201ENST00000568688 1174 ntBASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 AC010680.3-201ENST00000604215 520 ntBASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC88AQ3V6T2 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC068254.2-201ENST00000623938 3577 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AL031121.1-201ENST00000406553 254 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC017083.1-201ENST00000428093 483 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AL512649.1-201ENST00000428997 581 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 MAPRE1P3-201ENST00000435438 796 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC092447.2-201ENST00000435487 669 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 RN7SKP83-201ENST00000516512 178 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC079684.1-201ENST00000621405 437 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 MTCO1P46-201ENST00000451639 1491 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 RPS24P12-201ENST00000402084 394 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 SSR1P1-201ENST00000407630 814 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 GSTM3P2-201ENST00000412746 530 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 AC010469.1-201ENST00000463864 576 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 IGHV3-32-201ENST00000519182 355 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC88AQ3V6T2 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 MFSD8-236ENST00000641509 4050 ntBASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 SYF2-202ENST00000354361 926 ntTSL 2 BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 RPS29P4-201ENST00000414733 161 ntBASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 AC011270.1-201ENST00000558606 583 ntBASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 AL354976.1-201ENST00000613843 387 ntBASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC88AQ3V6T2 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 MIR1289-1-201ENST00000408836 144 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 OR2X1P-201ENST00000421144 687 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 DPY19L1P2-201ENST00000426647 915 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AL390879.2-203ENST00000426943 1121 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AL133162.1-201ENST00000463228 453 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AL136126.1-201ENST00000473603 402 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 STMN1P2-201ENST00000508435 439 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 RNA5SP164-201ENST00000516533 110 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 SNORA70.18-201ENST00000516696 98 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AC068020.1-201ENST00000594215 661 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AC125494.3-201ENST00000602759 455 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AC092435.4-201ENST00000623012 4159 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 NAMPTP1-201ENST00000440465 2514 ntBASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC88AQ3V6T2 AL035423.1-201ENST00000420331 213 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms