Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 BMS1P22-201ENST00000414726 313 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC004448.2-201ENST00000422360 586 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 RBMY1KP-201ENST00000423480 476 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 NPM1P28-201ENST00000492269 840 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 AC008694.2-201ENST00000517591 306 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC2.62□□□□□ -1.99
PRKDCP78527 IGKV2-26-201ENST00000518305 343 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC2.62□□□□□ -1.99
PRKDCP78527 AC127024.5-201ENST00000580085 462 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC067852.3-201ENST00000589177 561 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 IGHV3-29-201ENST00000604817 344 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC2.62□□□□□ -1.99
PRKDCP78527 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC2.62□□□□□ -1.99
PRKDCP78527 AL137918.1-201ENST00000624542 1922 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 RPS15AP29-201ENST00000445539 400 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC090602.1-201ENST00000469695 252 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 RNA5SP164-201ENST00000516533 110 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC006116.9-201ENST00000591630 649 ntTSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 AC104662.1-201ENST00000604448 511 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC005086.4-201ENST00000623065 213 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 RIOK3P1-201ENST00000418778 1528 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC2.62□□□□□ -1.99
PRKDCP78527 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 RNU6-7-201ENST00000364784 107 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 RNU6-8-201ENST00000365467 107 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC245054.1-201ENST00000420944 258 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC108734.1-201ENST00000439549 399 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.62□□□□□ -1.99
PRKDCP78527 PHBP17-201ENST00000528576 541 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 MIR4524B-201ENST00000581569 115 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 Xist_exon4.1-201ENST00000615964 126 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AL139089.1-201ENST00000620372 975 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 AC010149.2-201ENST00000637608 315 ntBASIC2.62□□□□□ -1.99
PRKDCP78527 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
PRKDCP78527 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
PRKDCP78527 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
PRKDCP78527 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC2.61□□□□□ -1.99
PRKDCP78527 COX6CP4-201ENST00000605798 228 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC2.61□□□□□ -1.99
PRKDCP78527 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC2.61□□□□□ -1.99
PRKDCP78527 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 OR5H2-201ENST00000355273 945 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PRKDCP78527 RNA5SP235-201ENST00000365411 114 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AC234772.1-201ENST00000377927 937 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 RPS21P8-201ENST00000413365 247 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 VTI1BP4-201ENST00000427516 527 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC108751.2-201ENST00000469993 231 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC2.61□□□□□ -1.99
PRKDCP78527 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC2.61□□□□□ -1.99
PRKDCP78527 PAIP2B-201ENST00000244221 6279 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC2.61□□□□□ -1.99
PRKDCP78527 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC2.61□□□□□ -1.99
PRKDCP78527 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
PRKDCP78527 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.61□□□□□ -1.99
PRKDCP78527 AF228730.2-201ENST00000438784 848 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC006517.1-201ENST00000480485 328 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AC026784.1-201ENST00000507986 352 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC2.61□□□□□ -1.99
PRKDCP78527 AC016839.1-201ENST00000578162 867 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 AL390816.3-201ENST00000604527 1066 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC2.61□□□□□ -1.99
PRKDCP78527 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 AC108206.1-201ENST00000570186 4159 ntBASIC2.61□□□□□ -1.99
PRKDCP78527 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PRKDCP78527 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms