Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 CFAP221-203ENST00000413369 2801 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 ENTPD1-AS1-202ENST00000416301 4241 ntTSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 RLIMP2-201ENST00000427891 1563 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC006511.3-201ENST00000624929 1783 ntBASIC5.67□□□□□ -1.5
RNF4P78317 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC5.67□□□□□ -1.5
RNF4P78317 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 TNP1-201ENST00000236979 407 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 RNA5SP375-201ENST00000362975 119 ntBASIC5.67□□□□□ -1.5
RNF4P78317 RNU6-282P-201ENST00000365357 103 ntBASIC5.67□□□□□ -1.5
RNF4P78317 RNU6-952P-201ENST00000391164 108 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AP003170.5-201ENST00000397185 335 ntBASIC5.67□□□□□ -1.5
RNF4P78317 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 AC008280.1-201ENST00000418851 412 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 AC133104.1-201ENST00000429100 218 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC104850.1-201ENST00000435940 476 ntBASIC5.67□□□□□ -1.5
RNF4P78317 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 YWHAZP8-201ENST00000436935 731 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC110602.1-201ENST00000437414 318 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.67□□□□□ -1.5
RNF4P78317 PPIAP27-201ENST00000453800 265 ntBASIC5.67□□□□□ -1.5
RNF4P78317 HIGD1AP8-201ENST00000453927 274 ntBASIC5.67□□□□□ -1.5
RNF4P78317 MTND1P12-201ENST00000455231 147 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 AC023194.2-201ENST00000465398 406 ntBASIC5.67□□□□□ -1.5
RNF4P78317 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 AC010301.1-201ENST00000473936 355 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC013356.1-201ENST00000489027 564 ntBASIC5.67□□□□□ -1.5
RNF4P78317 NDUFA5P12-201ENST00000503796 343 ntBASIC5.67□□□□□ -1.5
RNF4P78317 SNORA70.11-201ENST00000515987 138 ntBASIC5.67□□□□□ -1.5
RNF4P78317 SNORA70.13-201ENST00000516116 138 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC5.67□□□□□ -1.5
RNF4P78317 AC005363.1-201ENST00000530779 351 ntBASIC5.67□□□□□ -1.5
RNF4P78317 OR4A12P-201ENST00000530847 918 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.67□□□□□ -1.5
RNF4P78317 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 AC034268.2-201ENST00000571784 482 ntBASIC5.67□□□□□ -1.5
RNF4P78317 LARP7P2-201ENST00000575306 125 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC008507.3-201ENST00000585753 472 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC011476.3-202ENST00000586845 553 ntTSL 3 BASIC5.67□□□□□ -1.5
RNF4P78317 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.67□□□□□ -1.5
RNF4P78317 AC020916.2-201ENST00000591242 360 ntBASIC5.67□□□□□ -1.5
RNF4P78317 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC5.67□□□□□ -1.5
RNF4P78317 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.67□□□□□ -1.5
RNF4P78317 AC087283.1-201ENST00000604029 1074 ntBASIC5.67□□□□□ -1.5
RNF4P78317 HSPE1P14-201ENST00000605812 302 ntBASIC5.67□□□□□ -1.5
RNF4P78317 MIR98-201ENST00000606724 119 ntBASIC5.67□□□□□ -1.5
RNF4P78317 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC5.67□□□□□ -1.5
RNF4P78317 RN7SL261P-201ENST00000613441 282 ntBASIC5.67□□□□□ -1.5
RNF4P78317 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC5.67□□□□□ -1.5
RNF4P78317 SHQ1P1-201ENST00000437111 1544 ntBASIC5.67□□□□□ -1.5
RNF4P78317 AC015799.1-201ENST00000622996 3122 ntBASIC5.67□□□□□ -1.5
RNF4P78317 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.67□□□□□ -1.5
RNF4P78317 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
RNF4P78317 RBMY1HP-201ENST00000382759 1389 ntBASIC5.67□□□□□ -1.5
RNF4P78317 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 RBPJP2-201ENST00000618187 1444 ntBASIC5.66□□□□□ -1.5
RNF4P78317 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.66□□□□□ -1.5
RNF4P78317 AC079753.1-201ENST00000623243 3868 ntBASIC5.66□□□□□ -1.5
RNF4P78317 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
RNF4P78317 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
RNF4P78317 SNORD56.2-201ENST00000363242 71 ntBASIC5.66□□□□□ -1.5
RNF4P78317 Y_RNA.279-201ENST00000364763 95 ntBASIC5.66□□□□□ -1.5
RNF4P78317 MIR130B-202ENST00000385018 82 ntBASIC5.66□□□□□ -1.5
RNF4P78317 HMGB1P17-201ENST00000403495 628 ntBASIC5.66□□□□□ -1.5
RNF4P78317 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms