Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.63□□□□□ -1.83
FOXA1P55317 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.63□□□□□ -1.83
FOXA1P55317 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA1P55317 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
FOXA1P55317 AL133412.1-201ENST00000380194 2992 ntBASIC3.63□□□□□ -1.83
FOXA1P55317 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
FOXA1P55317 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
FOXA1P55317 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
FOXA1P55317 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA1P55317 RNU6-283P-201ENST00000364788 107 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC068538.1-201ENST00000376856 336 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 RNU6-213P-201ENST00000384051 104 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 RNU1-13P-201ENST00000384499 162 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 SNORA70C-201ENST00000384538 135 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 AL356967.1-201ENST00000406305 431 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC002075.2-201ENST00000425207 252 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 RPS26P47-201ENST00000427219 348 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 YY1P1-201ENST00000427625 668 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC006326.1-201ENST00000445465 787 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AL162151.2-201ENST00000448875 158 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 CYCSP53-201ENST00000455540 265 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC099560.2-201ENST00000457554 255 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 UBDP1-202ENST00000457888 382 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AP002371.1-201ENST00000463604 433 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC105918.1-201ENST00000474399 838 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 PRELID3BP7-201ENST00000503606 469 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 RN7SKP122-201ENST00000515923 296 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 TBCA-203ENST00000517679 545 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 OR5AP1P-201ENST00000529730 940 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC008011.1-201ENST00000545989 227 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 MTND2P17-201ENST00000550281 688 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA1P55317 AC020910.2-201ENST00000603635 610 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 AC022960.2-201ENST00000616300 666 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA1P55317 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.62□□□□□ -1.83
FOXA1P55317 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA1P55317 AC009951.1-201ENST00000623674 2614 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC3.62□□□□□ -1.83
FOXA1P55317 AC233968.1-201ENST00000611212 1300 ntBASIC3.62□□□□□ -1.83
FOXA1P55317 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA1P55317 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA1P55317 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
FOXA1P55317 MAPK10-372ENST00000641954 3413 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA1P55317 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.61□□□□□ -1.83
FOXA1P55317 RNU6-729P-201ENST00000384399 107 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 RNU6-178P-201ENST00000384631 104 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA1P55317 DSCR4-IT1-201ENST00000417138 424 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC114814.2-201ENST00000419195 485 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AL691447.1-201ENST00000419456 387 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 OR4C10P-201ENST00000434991 931 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 RPS26P40-201ENST00000435209 294 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AL645931.1-201ENST00000439737 410 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA1P55317 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.61□□□□□ -1.83
FOXA1P55317 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA1P55317 RN7SL809P-201ENST00000482040 297 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC006960.3-201ENST00000561845 705 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.61□□□□□ -1.83
FOXA1P55317 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC3.61□□□□□ -1.83
FOXA1P55317 KLKP1-201ENST00000595979 403 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.61□□□□□ -1.83
FOXA1P55317 AL137246.1-201ENST00000607072 977 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 AL354950.1-201ENST00000614150 568 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 FP236240.3-201ENST00000623061 327 ntBASIC3.61□□□□□ -1.83
FOXA1P55317 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA1P55317 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA1P55317 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA1P55317 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA1P55317 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
FOXA1P55317 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.61□□□□□ -1.83
FOXA1P55317 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
FOXA1P55317 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 AC074029.4-201ENST00000624796 1859 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA1P55317 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
FOXA1P55317 MTND5P23-201ENST00000430812 1655 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
FOXA1P55317 RNA5SP424-201ENST00000390988 115 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms