Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AL020997.3-201ENST00000602843 359 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 AC087283.1-201ENST00000604029 1074 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 Z99289.3-201ENST00000605586 594 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 AC009237.15-201ENST00000610252 501 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
PTPN9P43378 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.83□□□□□ -1.64
PTPN9P43378 AL596275.2-204ENST00000641628 552 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 AL596275.2-206ENST00000641957 626 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 LINC01355-201ENST00000566551 5444 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 ZNF137P-201ENST00000456718 1920 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 BX005019.1-201ENST00000561881 1810 ntBASIC4.83□□□□□ -1.64
PTPN9P43378 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
PTPN9P43378 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.82□□□□□ -1.64
PTPN9P43378 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC104446.1-201ENST00000613728 1321 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 RN7SKP224-201ENST00000364140 325 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 OR52E6-202ENST00000379946 954 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 Y_RNA.472-201ENST00000384322 102 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 RNU6-636P-201ENST00000384598 107 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 AF228730.1-201ENST00000397972 663 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 MIR298-201ENST00000401212 88 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 RPS24P12-201ENST00000402084 394 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 MIR1303-201ENST00000408625 86 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 VPS26BP1-201ENST00000417155 755 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 KRR1P1-201ENST00000419430 803 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 RPL12P28-201ENST00000430852 489 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 Z80107.2-201ENST00000445127 392 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 AC005229.2-201ENST00000456995 399 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 RPL35AP28-201ENST00000459730 331 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC104763.1-201ENST00000475274 360 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 AC073522.1-201ENST00000483312 377 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.82□□□□□ -1.64
PTPN9P43378 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.82□□□□□ -1.64
PTPN9P43378 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.82□□□□□ -1.64
PTPN9P43378 AC068790.7-201ENST00000602347 528 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 AC016877.3-201ENST00000606778 504 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 AP001784.1-201ENST00000624107 428 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
PTPN9P43378 LINC02211-204ENST00000642024 1070 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
PTPN9P43378 LINC01109-201ENST00000603837 3081 ntBASIC4.82□□□□□ -1.64
PTPN9P43378 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.82□□□□□ -1.64
PTPN9P43378 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PTPN9P43378 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.81□□□□□ -1.64
PTPN9P43378 AL592182.3-201ENST00000642132 3304 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PTPN9P43378 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 SDHCP2-201ENST00000398565 501 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AL079342.2-201ENST00000403367 482 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
PTPN9P43378 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.81□□□□□ -1.64
PTPN9P43378 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.81□□□□□ -1.64
PTPN9P43378 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.81□□□□□ -1.64
PTPN9P43378 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.81□□□□□ -1.64
PTPN9P43378 AC107081.1-201ENST00000414975 361 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AL356320.2-201ENST00000417263 507 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PTPN9P43378 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.81□□□□□ -1.64
PTPN9P43378 GAPDHP49-201ENST00000421421 961 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC4.81□□□□□ -1.64
PTPN9P43378 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.81□□□□□ -1.64
PTPN9P43378 AC073069.1-201ENST00000428657 441 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AL772161.1-201ENST00000439130 476 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 RPS7P5-201ENST00000441482 581 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 HMGB3P9-201ENST00000441799 583 ntBASIC4.81□□□□□ -1.64
PTPN9P43378 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms