Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SEPT14P1-201ENST00000458703 648 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 RPL21P11-201ENST00000461458 483 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC4.58□□□□□ -1.68
SCN4AP35499 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.58□□□□□ -1.68
SCN4AP35499 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.58□□□□□ -1.68
SCN4AP35499 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.58□□□□□ -1.68
SCN4AP35499 AC009237.17-201ENST00000618111 748 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.58□□□□□ -1.68
SCN4AP35499 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SCN4AP35499 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
SCN4AP35499 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC4.58□□□□□ -1.68
SCN4AP35499 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SCN4AP35499 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.58□□□□□ -1.68
SCN4AP35499 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SCN4AP35499 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SCN4AP35499 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SCN4AP35499 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
SCN4AP35499 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SCN4AP35499 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SCN4AP35499 AC097713.2-201ENST00000430199 356 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 RPS3AP14-201ENST00000483907 780 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.58□□□□□ -1.68
SCN4AP35499 OR10D4P-201ENST00000525892 951 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 UBTFL9-201ENST00000534504 1148 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 AC006960.3-201ENST00000561845 705 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.58□□□□□ -1.68
SCN4AP35499 AC244517.3-201ENST00000616254 1235 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 AC124312.6-202ENST00000623624 418 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 AC119674.1-207ENST00000641355 633 ntBASIC4.58□□□□□ -1.68
SCN4AP35499 BTBD10P1-201ENST00000549824 1352 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.57□□□□□ -1.68
SCN4AP35499 BDP1P-201ENST00000582658 1990 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
SCN4AP35499 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
SCN4AP35499 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
SCN4AP35499 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
SCN4AP35499 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 AC067945.1-201ENST00000342609 618 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 PGBD4P8-201ENST00000412993 562 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 RPS23P10-201ENST00000416185 486 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 AC010740.1-201ENST00000417035 684 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 AC005326.1-201ENST00000429197 123 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.57□□□□□ -1.68
SCN4AP35499 MTCO1P45-201ENST00000431457 267 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 AC097462.2-201ENST00000504623 481 ntBASIC4.57□□□□□ -1.68
SCN4AP35499 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.57□□□□□ -1.68
SCN4AP35499 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
SCN4AP35499 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SCN4AP35499 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.56□□□□□ -1.68
SCN4AP35499 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 RNA5SP296-201ENST00000410523 111 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 VN1R51P-201ENST00000411675 945 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.56□□□□□ -1.68
SCN4AP35499 RPL23AP89-201ENST00000439324 255 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 RANP8-201ENST00000444720 713 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 RPS17P13-201ENST00000448974 407 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 RPL23AP12-201ENST00000467573 473 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 RN7SL807P-201ENST00000470923 297 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.56□□□□□ -1.68
SCN4AP35499 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.56□□□□□ -1.68
SCN4AP35499 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.56□□□□□ -1.68
SCN4AP35499 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.56□□□□□ -1.68
SCN4AP35499 AC009303.3-201ENST00000591103 736 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 AC018690.1-201ENST00000608144 626 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 AC074276.2-201ENST00000619891 348 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 CR392039.4-201ENST00000624968 501 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.56□□□□□ -1.68
SCN4AP35499 KPNA2P2-201ENST00000419546 1489 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
SCN4AP35499 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.56□□□□□ -1.68
SCN4AP35499 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SCN4AP35499 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SCN4AP35499 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.56□□□□□ -1.68
SCN4AP35499 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC4.56□□□□□ -1.68
SCN4AP35499 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.56□□□□□ -1.68
SCN4AP35499 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.56□□□□□ -1.68
SCN4AP35499 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.56□□□□□ -1.68
SCN4AP35499 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.56□□□□□ -1.68
SCN4AP35499 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC4.56□□□□□ -1.68
SCN4AP35499 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.56□□□□□ -1.68
SCN4AP35499 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.56□□□□□ -1.68
SCN4AP35499 AC064801.1-201ENST00000612025 407 ntBASIC4.56□□□□□ -1.68
SCN4AP35499 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SCN4AP35499 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 125.4 ms