Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXD3P31249 RPL5P22-201ENST00000480199 884 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 HMGN2P25-201ENST00000486956 268 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 ARL4AP1-201ENST00000503220 705 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 RFPL4AP5-201ENST00000514977 504 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RNA5SP228-201ENST00000516232 133 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 RNU6-347P-201ENST00000516658 105 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 AC022832.1-201ENST00000530718 645 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXD3P31249 OR7K1P-201ENST00000546439 926 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 AC005341.1-201ENST00000571086 708 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD3P31249 MTCYBP22-201ENST00000603788 447 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 AL021997.1-201ENST00000605757 193 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC093388.1-201ENST00000609166 430 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC005332.6-201ENST00000613178 446 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 AC005618.4-201ENST00000625053 554 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AL392088.2-201ENST00000637607 285 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 AC074101.1-201ENST00000637861 241 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD3P31249 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.17□□□□□ -1.74
HOXD3P31249 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 UQCRC2P1-201ENST00000417777 1332 ntBASIC4.17□□□□□ -1.74
HOXD3P31249 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.17□□□□□ -1.74
HOXD3P31249 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD3P31249 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD3P31249 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 AL078621.3-201ENST00000623707 2042 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 RNU6-374P-201ENST00000364146 108 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 RNU6-660P-201ENST00000364566 109 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 Y_RNA.359-201ENST00000365498 102 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 RNU1-106P-201ENST00000384382 164 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 SNORA67-201ENST00000384423 137 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 RNU6-178P-201ENST00000384631 104 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
HOXD3P31249 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AL133270.1-201ENST00000402635 279 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 NPM1P40-201ENST00000412758 733 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AL354868.1-201ENST00000417077 482 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC108075.1-201ENST00000424692 529 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 MTCO3P21-201ENST00000430791 643 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AL034418.1-201ENST00000448675 860 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 RPL36AP33-201ENST00000450395 310 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 MAST4-AS1-201ENST00000451496 777 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 OR52E3P-201ENST00000452083 936 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC092754.1-201ENST00000472975 479 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC109486.1-201ENST00000486833 374 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 OR1F2P-201ENST00000570470 933 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.16□□□□□ -1.74
HOXD3P31249 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC008759.1-201ENST00000589783 983 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
HOXD3P31249 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.16□□□□□ -1.74
HOXD3P31249 AC006363.1-201ENST00000603806 463 ntBASIC4.16□□□□□ -1.74
HOXD3P31249 AC009027.1-201ENST00000604510 479 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms