Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC3.64□□□□□ -1.83
USF1P22415 AC010374.1-201ENST00000503762 1237 ntBASIC3.64□□□□□ -1.83
USF1P22415 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC3.64□□□□□ -1.83
USF1P22415 ATP1B1P1-201ENST00000509767 915 ntBASIC3.64□□□□□ -1.83
USF1P22415 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 MTND4LP31-201ENST00000514859 294 ntBASIC3.64□□□□□ -1.83
USF1P22415 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.64□□□□□ -1.83
USF1P22415 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC3.64□□□□□ -1.83
USF1P22415 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC3.64□□□□□ -1.83
USF1P22415 TRAV8-5-201ENST00000537369 341 ntBASIC3.64□□□□□ -1.83
USF1P22415 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC3.64□□□□□ -1.83
USF1P22415 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC3.64□□□□□ -1.83
USF1P22415 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC3.64□□□□□ -1.83
USF1P22415 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 AC073111.2-201ENST00000605657 1075 ntBASIC3.64□□□□□ -1.83
USF1P22415 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.64□□□□□ -1.83
USF1P22415 AL353726.1-201ENST00000614041 1000 ntBASIC3.64□□□□□ -1.83
USF1P22415 AC023509.5-201ENST00000617434 807 ntBASIC3.64□□□□□ -1.83
USF1P22415 MIR7154-201ENST00000620673 73 ntBASIC3.64□□□□□ -1.83
USF1P22415 LGI1-209ENST00000627699 664 ntTSL 3 BASIC3.64□□□□□ -1.83
USF1P22415 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.64□□□□□ -1.83
USF1P22415 AL133412.1-201ENST00000380194 2992 ntBASIC3.64□□□□□ -1.83
USF1P22415 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
USF1P22415 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USF1P22415 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
USF1P22415 IQCB2P-201ENST00000401788 1633 ntBASIC3.63□□□□□ -1.83
USF1P22415 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
USF1P22415 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 CARF-208ENST00000428585 2513 ntTSL 2 BASIC3.63□□□□□ -1.83
USF1P22415 RN7SKP280-201ENST00000364196 304 ntBASIC3.63□□□□□ -1.83
USF1P22415 RNA5SP175-201ENST00000364275 119 ntBASIC3.63□□□□□ -1.83
USF1P22415 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC3.63□□□□□ -1.83
USF1P22415 AL161909.1-201ENST00000397390 712 ntBASIC3.63□□□□□ -1.83
USF1P22415 RPS20P14-201ENST00000412545 360 ntBASIC3.63□□□□□ -1.83
USF1P22415 AC108032.1-201ENST00000416706 207 ntBASIC3.63□□□□□ -1.83
USF1P22415 RPL36AP36-201ENST00000418616 301 ntBASIC3.63□□□□□ -1.83
USF1P22415 AL138785.1-201ENST00000425821 331 ntBASIC3.63□□□□□ -1.83
USF1P22415 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 YY1P1-201ENST00000427625 668 ntBASIC3.63□□□□□ -1.83
USF1P22415 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.63□□□□□ -1.83
USF1P22415 BMS1P19-201ENST00000433925 393 ntBASIC3.63□□□□□ -1.83
USF1P22415 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC3.63□□□□□ -1.83
USF1P22415 Z95327.1-201ENST00000446082 482 ntBASIC3.63□□□□□ -1.83
USF1P22415 AC104306.1-201ENST00000449702 371 ntBASIC3.63□□□□□ -1.83
USF1P22415 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 KCTD9P2-201ENST00000512203 1013 ntBASIC3.63□□□□□ -1.83
USF1P22415 RNA5SP154-201ENST00000516193 111 ntBASIC3.63□□□□□ -1.83
USF1P22415 RNA5SP49-201ENST00000516450 115 ntBASIC3.63□□□□□ -1.83
USF1P22415 AC100770.1-201ENST00000532310 322 ntBASIC3.63□□□□□ -1.83
USF1P22415 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.63□□□□□ -1.83
USF1P22415 AC023158.1-201ENST00000561632 1025 ntBASIC3.63□□□□□ -1.83
USF1P22415 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 AC034105.4-201ENST00000568304 277 ntBASIC3.63□□□□□ -1.83
USF1P22415 MIR4512-201ENST00000583257 77 ntBASIC3.63□□□□□ -1.83
USF1P22415 MIR92B-201ENST00000607575 96 ntBASIC3.63□□□□□ -1.83
USF1P22415 AP002360.3-201ENST00000607673 710 ntBASIC3.63□□□□□ -1.83
USF1P22415 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 AC099676.1-201ENST00000608886 657 ntBASIC3.63□□□□□ -1.83
USF1P22415 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.63□□□□□ -1.83
USF1P22415 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 MIR6891-201ENST00000618788 93 ntBASIC3.63□□□□□ -1.83
USF1P22415 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.63□□□□□ -1.83
USF1P22415 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC3.63□□□□□ -1.83
USF1P22415 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
USF1P22415 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.63□□□□□ -1.83
USF1P22415 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USF1P22415 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
USF1P22415 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.62□□□□□ -1.83
USF1P22415 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USF1P22415 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
USF1P22415 MTCO1P8-201ENST00000416914 1523 ntBASIC3.62□□□□□ -1.83
USF1P22415 RNA5SP307-201ENST00000362863 116 ntBASIC3.62□□□□□ -1.83
USF1P22415 NRBF2P2-201ENST00000413087 861 ntBASIC3.62□□□□□ -1.83
USF1P22415 AL139095.3-201ENST00000419672 1203 ntBASIC3.62□□□□□ -1.83
USF1P22415 DYNLL1P7-201ENST00000429273 258 ntBASIC3.62□□□□□ -1.83
USF1P22415 BTF3P10-201ENST00000433415 495 ntBASIC3.62□□□□□ -1.83
USF1P22415 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.62□□□□□ -1.83
USF1P22415 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USF1P22415 HMGB1P26-201ENST00000452520 628 ntBASIC3.62□□□□□ -1.83
USF1P22415 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USF1P22415 DDX39BP2-208ENST00000453923 258 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms