Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXD4P09016 AC023509.5-201ENST00000617434 807 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 AC006065.6-201ENST00000625201 545 ntBASIC4.08□□□□□ -1.76
HOXD4P09016 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXD4P09016 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HOXD4P09016 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD4P09016 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD4P09016 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
HOXD4P09016 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
HOXD4P09016 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 AC074029.4-201ENST00000624796 1859 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXD4P09016 CASC19-261ENST00000641853 1638 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD4P09016 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 RNU6-178P-201ENST00000384631 104 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL158050.1-201ENST00000416077 457 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 AC099336.2-201ENST00000422457 254 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 MTCYBP32-201ENST00000427945 1084 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 RPS29P17-201ENST00000430795 166 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 AL645931.1-201ENST00000439737 410 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 AL353898.1-201ENST00000444055 238 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 TDGF1P1-201ENST00000445734 527 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AL354710.1-201ENST00000453641 246 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 RPL7P32-201ENST00000457119 744 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL133477.1-201ENST00000457472 514 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC099560.2-201ENST00000457554 255 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 RPL32P14-201ENST00000463196 378 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC146944.2-203ENST00000502493 354 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC139495.1-202ENST00000513164 354 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC018797.3-201ENST00000513388 1241 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC026402.1-201ENST00000513642 170 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC110760.3-202ENST00000515177 371 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 AP003355.1-201ENST00000518956 587 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD4P09016 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXD4P09016 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD4P09016 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXD4P09016 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC093227.2-201ENST00000589357 285 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD4P09016 HMGB2P1-201ENST00000591146 634 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC096947.1-201ENST00000603233 470 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL139286.1-201ENST00000604465 483 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC024941.1-201ENST00000612250 334 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD4P09016 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 AC010608.3-201ENST00000625048 527 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC119674.1-212ENST00000641155 993 ntBASIC4.07□□□□□ -1.76
HOXD4P09016 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
HOXD4P09016 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD4P09016 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD4P09016 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 AL359715.4-201ENST00000606629 1436 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 OR11H5P-202ENST00000641612 1325 ntBASIC4.06□□□□□ -1.76
HOXD4P09016 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.06□□□□□ -1.76
HOXD4P09016 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
HOXD4P09016 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
HOXD4P09016 MIR16-2-201ENST00000362117 81 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms