Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AP001893.2-201ENST00000526949 202 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA3O43365 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA3O43365 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA3O43365 AL390334.1-201ENST00000556395 450 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA3O43365 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA3O43365 MIR3189-201ENST00000578735 73 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA3O43365 SNORD95-201ENST00000579879 68 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA3O43365 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA3O43365 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXA3O43365 AC063977.5-201ENST00000601044 974 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 DUXAP4-201ENST00000603046 613 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA3O43365 AL590282.1-201ENST00000610379 1136 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 UBE2Q2P2-203ENST00000613592 761 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA3O43365 RALGAPA1P1-201ENST00000443361 6232 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 AL731556.1-201ENST00000394628 3711 ntBASIC4.82□□□□□ -1.64
HOXA3O43365 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA3O43365 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA3O43365 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA3O43365 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA3O43365 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA3O43365 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA3O43365 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HOXA3O43365 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA3O43365 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC015799.1-201ENST00000622996 3122 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXA3O43365 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 HDAC1P2-201ENST00000453661 1398 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 PARP4P2-201ENST00000446672 3326 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA3O43365 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 OR11H5P-202ENST00000641612 1325 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HOXA3O43365 MIR375-201ENST00000362103 64 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HOXA3O43365 RNU6-769P-201ENST00000384407 104 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXA3O43365 HMGB1P17-201ENST00000403495 628 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 NMD3P2-201ENST00000421815 761 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 AL445669.1-201ENST00000426743 755 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 ELOCP14-201ENST00000428070 331 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 TRIM60P3Y-201ENST00000432201 673 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC023347.2-201ENST00000433994 462 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC098614.3-201ENST00000438957 440 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 ELOCP7-201ENST00000439968 331 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC090142.1-201ENST00000465776 462 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXA3O43365 RN7SL57P-201ENST00000493687 290 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AL136038.1-201ENST00000497246 351 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC008629.2-201ENST00000503783 483 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 KCTD9P5-201ENST00000504141 1170 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 SAP18P1-201ENST00000512058 390 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 CYCSP22-201ENST00000517555 339 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC015468.3-201ENST00000518967 417 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC018793.4-201ENST00000524542 585 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXA3O43365 OR4R3P-201ENST00000525084 838 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 FAM92A1P1-201ENST00000528023 890 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.81□□□□□ -1.64
HOXA3O43365 AL121594.2-201ENST00000541658 472 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
HOXA3O43365 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC091078.2-201ENST00000557145 559 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA3O43365 MIR3682-201ENST00000581338 84 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC005730.3-201ENST00000583067 366 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA3O43365 TPMTP1-201ENST00000592307 737 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA3O43365 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA3O43365 SUGT1P3-202ENST00000604259 383 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AL139286.1-201ENST00000604465 483 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AC018695.5-201ENST00000605872 315 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AL355816.1-201ENST00000607951 118 ntBASIC4.81□□□□□ -1.64
HOXA3O43365 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms