Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC245028.1-201ENST00000423259 256 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 PTP4A1P7-201ENST00000423476 514 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC011242.1-201ENST00000433596 1158 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 NDUFA12P1-201ENST00000455914 406 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 RPL7P32-201ENST00000457119 744 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC090142.1-201ENST00000465776 462 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 RPS27P23-201ENST00000487608 251 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC025164.1-201ENST00000496249 478 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC008427.1-201ENST00000503102 655 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AF279873.1-201ENST00000523393 313 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC090819.1-201ENST00000523800 1111 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC074029.1-201ENST00000552531 1044 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC067852.4-201ENST00000590314 478 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC234771.5-201ENST00000600161 514 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC068790.7-201ENST00000602347 528 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AL353600.1-201ENST00000608148 251 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 uc_338.18-201ENST00000615451 175 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 MIR7703-201ENST00000620784 77 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC140113.4-201ENST00000622087 222 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 BX649567.1-201ENST00000642071 1134 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AC091046.3-201ENST00000631455 1574 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 RNU6-1000P-201ENST00000391066 106 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 ARL4AP5-201ENST00000404372 599 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AC092638.1-201ENST00000411966 1275 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 SDR42E1P3-201ENST00000438345 502 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 AC011753.3-201ENST00000443436 406 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 CEACAMP6-201ENST00000452007 574 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 RN7SL817P-201ENST00000480777 288 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AC119751.1-201ENST00000513357 765 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 RPL21P7-201ENST00000557463 483 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AC091979.2-201ENST00000607514 214 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 AP000346.3-201ENST00000622821 210 ntBASIC4.79□□□□□ -1.64
VPS28Q9UK41 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.79□□□□□ -1.64
VPS28Q9UK41 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
VPS28Q9UK41 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS28Q9UK41 MFSD4BP1-201ENST00000513330 1552 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 AC108467.2-201ENST00000617640 1597 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS28Q9UK41 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS28Q9UK41 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS28Q9UK41 ZNF137P-201ENST00000456718 1920 ntBASIC4.78□□□□□ -1.64
VPS28Q9UK41 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
VPS28Q9UK41 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.78□□□□□ -1.64
VPS28Q9UK41 RNU6-1293P-201ENST00000384077 107 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms