Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 BNIP3P26-201ENST00000600827 554 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC103881.1-201ENST00000603476 538 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AL365204.3-201ENST00000612448 685 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC138649.3-201ENST00000622154 254 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC015722.2-201ENST00000622210 551 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 SAMD3-205ENST00000457563 1877 ntTSL 2 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 AL353743.4-201ENST00000422653 1547 ntBASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC6.44□□□□□ -1.38
CCDC39Q9UFE4 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 THAP12P5-201ENST00000405864 2275 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 HSPD1P7-201ENST00000447985 1686 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 UGT2B10-201ENST00000265403 1931 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 RN7SKP275-201ENST00000364626 301 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 NCSTNP1-201ENST00000406229 144 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 TAF13P2-201ENST00000416876 286 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 RNF10P1-201ENST00000418589 369 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 LINC00993-201ENST00000420453 540 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PCBP2P1-201ENST00000437262 977 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PCNPP2-201ENST00000441651 455 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 USP9YP15-201ENST00000442391 422 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PSPHP1-201ENST00000450062 261 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PPIA-203ENST00000451562 544 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 RPS17P15-201ENST00000475609 349 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC098583.1-201ENST00000480875 255 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC114781.3-201ENST00000512083 142 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC107958.1-201ENST00000556576 290 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 OR4K7P-201ENST00000580232 945 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 MIR4795-201ENST00000584182 89 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC060780.3-201ENST00000589464 80 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AP004372.1-201ENST00000604842 844 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC124864.2-201ENST00000624736 186 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 SAMMSON-227ENST00000642114 1199 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AL079343.1-201ENST00000572358 1771 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 AC104964.3-201ENST00000606115 2860 ntBASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.43□□□□□ -1.38
CCDC39Q9UFE4 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC010132.2-201ENST00000295493 1043 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 RNU1-150P-201ENST00000362491 162 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC066692.1-201ENST00000421721 457 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 BX323845.3-201ENST00000428215 527 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 ZYG11AP1-201ENST00000430329 837 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 TMEM183AP1-205ENST00000432739 290 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 RN7SL741P-201ENST00000482473 289 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 RPL32P33-201ENST00000487023 394 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AL049874.2-201ENST00000492636 288 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC021678.1-201ENST00000505195 936 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC060775.1-201ENST00000518241 520 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 TRIM77BP-201ENST00000524985 1119 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC068993.1-201ENST00000546724 589 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC092121.1-201ENST00000569452 202 ntBASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC087392.1-201ENST00000576252 820 ntTSL 2 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.42□□□□□ -1.38
CCDC39Q9UFE4 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms