Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 ATF1P1-201ENST00000406040 927 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC009302.1-201ENST00000417147 390 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC099336.2-201ENST00000422457 254 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC012519.1-201ENST00000424588 610 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 DEFB130D-201ENST00000426866 237 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 RPS7P2-201ENST00000435134 607 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 RPS3AP54-201ENST00000435535 734 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 PTMAP3-201ENST00000447474 330 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 GTF2IP12-201ENST00000456547 356 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC099560.2-201ENST00000457554 255 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 RPL7AP28-201ENST00000464513 571 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC010627.1-201ENST00000503819 1294 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC093801.2-201ENST00000503966 1050 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC026414.1-201ENST00000504046 698 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC111193.1-201ENST00000504097 155 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 MRPL49P2-201ENST00000521066 465 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC104115.2-201ENST00000523026 687 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 CYCSP29-201ENST00000533731 318 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC067959.1-201ENST00000604334 379 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 MKKS-203ENST00000609375 882 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC124016.2-201ENST00000610058 665 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC234782.5-201ENST00000617723 324 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC006065.6-201ENST00000625201 545 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 AC006927.2-201ENST00000639256 389 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 SEC63P2-201ENST00000503863 1939 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL450326.2-201ENST00000421913 1962 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 ZNF849P-201ENST00000594711 1566 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RNU1-83P-201ENST00000363426 164 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RPL23AP26-201ENST00000412728 464 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL358176.3-201ENST00000420757 454 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RAD23BP1-201ENST00000421404 1227 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 SEC63P1-201ENST00000425785 1258 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 ARF4P4-201ENST00000439608 520 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 MTATP6P14-201ENST00000455189 673 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RNA5SP103-201ENST00000459503 118 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC112206.1-201ENST00000468416 477 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 RPL21P18-201ENST00000469899 480 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC105137.1-201ENST00000484355 562 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC093824.1-201ENST00000508796 343 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC025260.1-201ENST00000548858 430 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC084824.1-201ENST00000550917 1005 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC091178.1-203ENST00000584586 279 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 ZNF92P3-201ENST00000596594 954 ntBASIC4.36□□□□□ -1.71
CCDC3Q9BQI4 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms