Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC097374.1-203ENST00000400783 485 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 SNORA11F-201ENST00000408237 128 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC010385.1-201ENST00000412374 256 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 TRAPPC2P10-201ENST00000415662 323 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AL732292.1-201ENST00000426692 226 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC023141.6-201ENST00000429418 337 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 PTP4A1P3-201ENST00000433661 420 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 EXTL2P1-201ENST00000446218 416 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 CYCSP42-201ENST00000450823 238 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 RPL7P22-201ENST00000466005 733 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 RN7SL810P-201ENST00000493031 276 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 RFPL1S-203ENST00000539579 330 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC068714.1-201ENST00000559623 800 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC036103.1-201ENST00000563846 823 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC009101.1-201ENST00000568135 242 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 MIR4644-201ENST00000579929 84 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC092474.3-201ENST00000603022 568 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC123786.2-201ENST00000603459 275 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC113403.1-201ENST00000604910 193 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AC017076.1-201ENST00000607613 578 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AL021997.2-201ENST00000615674 271 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 MIR1264-201ENST00000616374 69 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 AP006248.3-201ENST00000623580 594 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 FRG1DP-201ENST00000635586 771 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 METTL8-218ENST00000638989 876 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AL451142.2-201ENST00000429076 2090 ntBASIC3.82□□□□□ -1.8
SKA3Q8IX90 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA3Q8IX90 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
SKA3Q8IX90 FAM35DP-201ENST00000323387 2712 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 MAPK10-253ENST00000641010 4072 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 RNU1-32P-201ENST00000363937 159 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 RNA5SP175-201ENST00000364275 119 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 SNORA56-201ENST00000383966 129 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SKA3Q8IX90 MIR1911-201ENST00000410783 80 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 RNU2-72P-201ENST00000411175 163 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 UBTFL3-201ENST00000418934 1024 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AL160175.1-201ENST00000428124 247 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 RPS29P17-201ENST00000430795 166 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 RPL17P35-201ENST00000432217 549 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 MTCO1P52-201ENST00000433928 531 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 IFNWP4-201ENST00000453148 294 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 RPL23AP24-201ENST00000458203 385 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 RN7SL98P-201ENST00000462271 300 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 UBTFL6-201ENST00000477929 1024 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 RPL23AP73-201ENST00000492507 471 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC025674.1-201ENST00000507074 324 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC010468.3-201ENST00000508225 458 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 AL352979.3-201ENST00000553515 247 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 MIR5096-201ENST00000583713 70 ntBASIC3.81□□□□□ -1.8
SKA3Q8IX90 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.81□□□□□ -1.8
SKA3Q8IX90 AC005034.4-201ENST00000603612 899 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms