Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC5.44□□□□□ -1.54
USP39Q53GS9 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.44□□□□□ -1.54
USP39Q53GS9 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 OR4F13P-202ENST00000560066 2054 ntBASIC5.44□□□□□ -1.54
USP39Q53GS9 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.44□□□□□ -1.54
USP39Q53GS9 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
USP39Q53GS9 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
USP39Q53GS9 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.44□□□□□ -1.54
USP39Q53GS9 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 AP005435.3-201ENST00000531260 3198 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
USP39Q53GS9 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 RBPJP2-201ENST00000618187 1444 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC010266.2-201ENST00000564741 3255 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC016716.1-201ENST00000265882 708 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 RNY4P24-201ENST00000362735 96 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 RN7SKP145-201ENST00000363291 303 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 SNORA56-201ENST00000383966 129 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 PEX12P1-201ENST00000400284 1048 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC027644.1-201ENST00000419595 298 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 GNG5P5-201ENST00000420444 220 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 RPL7P30-201ENST00000420888 709 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 ETF1P3-201ENST00000430422 1160 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AL049745.1-201ENST00000433953 286 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AL590103.1-201ENST00000434488 307 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 LINC02210-201ENST00000444561 288 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 GAPDHP25-201ENST00000447061 1001 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC092001.1-201ENST00000453012 261 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 CBX1P2-201ENST00000453841 458 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC091959.2-201ENST00000477363 321 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 BX284632.1-201ENST00000478218 541 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 FCF1P3-201ENST00000496394 590 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC5.43□□□□□ -1.54
USP39Q53GS9 BNIP3P41-201ENST00000503774 571 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC5.43□□□□□ -1.54
USP39Q53GS9 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 EIF3KP3-201ENST00000514461 639 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.43□□□□□ -1.54
USP39Q53GS9 OR5AZ1P-201ENST00000527448 943 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC024940.3-201ENST00000538551 316 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.43□□□□□ -1.54
USP39Q53GS9 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC012435.1-202ENST00000568772 240 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 SNORA59B-202ENST00000578183 701 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AP005403.1-201ENST00000579720 229 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 SUMO2P14-201ENST00000604488 293 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC097505.1-201ENST00000610199 565 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC025594.3-201ENST00000613068 790 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 EIF3FP1-201ENST00000613970 806 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AL133370.2-201ENST00000619934 439 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.43□□□□□ -1.54
USP39Q53GS9 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.43□□□□□ -1.54
USP39Q53GS9 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 OR9K1P-202ENST00000641111 3217 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
USP39Q53GS9 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.43□□□□□ -1.54
USP39Q53GS9 AC132825.1-201ENST00000463573 2247 ntBASIC5.43□□□□□ -1.54
USP39Q53GS9 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.43□□□□□ -1.54
USP39Q53GS9 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
USP39Q53GS9 STX3-208ENST00000641815 3236 ntBASIC5.42□□□□□ -1.54
USP39Q53GS9 AC104964.3-201ENST00000606115 2860 ntBASIC5.42□□□□□ -1.54
USP39Q53GS9 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
USP39Q53GS9 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
USP39Q53GS9 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
USP39Q53GS9 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.42□□□□□ -1.54
USP39Q53GS9 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms