Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
HOXA1P49639 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
HOXA1P49639 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
HOXA1P49639 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.12□□□□□ -1.75
HOXA1P49639 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC008725.1-201ENST00000605123 2263 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC103591.2-201ENST00000265259 766 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
HOXA1P49639 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 RNA5SP234-201ENST00000363916 119 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 MIR143-201ENST00000385300 106 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL512422.1-201ENST00000407033 553 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 RNA5SP178-201ENST00000410380 128 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 RN7SKP293-201ENST00000411389 296 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC009302.1-201ENST00000417147 390 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 RWDD4P2-201ENST00000426392 563 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL139148.1-201ENST00000427122 680 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 TXNL1P1-201ENST00000429528 554 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 FAM96AP1-201ENST00000430879 482 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC093414.1-201ENST00000434712 514 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 NMNAT1P2-201ENST00000435192 860 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 AL008629.1-201ENST00000438615 184 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 CBX1P4-201ENST00000439415 457 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL390119.1-201ENST00000440329 312 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 EEF1A1P1-201ENST00000447052 739 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL133217.1-201ENST00000450980 425 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC005229.2-201ENST00000456995 399 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL133445.1-201ENST00000467051 452 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC011979.1-201ENST00000472300 483 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 AC098799.3-201ENST00000506095 438 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 RPL7L1P4-201ENST00000513004 707 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 RNU5A-4P-201ENST00000516588 111 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 RNU6-347P-201ENST00000516658 105 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.11□□□□□ -1.75
HOXA1P49639 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC135001.1-201ENST00000544546 283 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 AL121834.1-201ENST00000572284 509 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 MIR1273E-201ENST00000581165 102 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL109653.1-201ENST00000603091 248 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC021749.1-201ENST00000604322 607 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC010245.2-201ENST00000606908 1167 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC005840.5-201ENST00000619166 599 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC127024.6-201ENST00000621598 424 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AC109454.4-201ENST00000623411 649 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC087821.2-201ENST00000637086 450 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 MTCO1P6-201ENST00000481192 1384 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
HOXA1P49639 AC015813.6-201ENST00000624409 5808 ntBASIC4.11□□□□□ -1.75
HOXA1P49639 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 COMMD8-201ENST00000381571 1469 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
HOXA1P49639 DHX9P1-201ENST00000436565 3076 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.1□□□□□ -1.75
HOXA1P49639 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.1□□□□□ -1.75
HOXA1P49639 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.1□□□□□ -1.75
HOXA1P49639 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
HOXA1P49639 FAM133CP-201ENST00000332869 704 ntBASIC4.1□□□□□ -1.75
HOXA1P49639 RN7SKP113-201ENST00000363891 295 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms