Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC4□□□□□ -1.77
CDX1P47902 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 RNU6-224P-201ENST00000384055 107 ntBASIC4□□□□□ -1.77
CDX1P47902 Z97832.1-201ENST00000402490 328 ntBASIC4□□□□□ -1.77
CDX1P47902 RPL23AP48-201ENST00000406913 488 ntBASIC4□□□□□ -1.77
CDX1P47902 VN1R51P-201ENST00000411675 945 ntBASIC4□□□□□ -1.77
CDX1P47902 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 MTCYBP32-201ENST00000427945 1084 ntBASIC4□□□□□ -1.77
CDX1P47902 RPL36P19-201ENST00000430744 301 ntBASIC4□□□□□ -1.77
CDX1P47902 NMNAT1P2-201ENST00000435192 860 ntBASIC4□□□□□ -1.77
CDX1P47902 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4□□□□□ -1.77
CDX1P47902 PPIAP17-201ENST00000438507 471 ntBASIC4□□□□□ -1.77
CDX1P47902 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 AC006967.1-201ENST00000467608 589 ntBASIC4□□□□□ -1.77
CDX1P47902 BX284632.1-201ENST00000478218 541 ntBASIC4□□□□□ -1.77
CDX1P47902 RN7SL244P-201ENST00000493405 297 ntBASIC4□□□□□ -1.77
CDX1P47902 RN7SL808P-201ENST00000496066 299 ntBASIC4□□□□□ -1.77
CDX1P47902 NDUFA5P12-201ENST00000503796 343 ntBASIC4□□□□□ -1.77
CDX1P47902 SNX5P1-201ENST00000505757 1041 ntBASIC4□□□□□ -1.77
CDX1P47902 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 NDUFB5P1-201ENST00000508134 564 ntBASIC4□□□□□ -1.77
CDX1P47902 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4□□□□□ -1.77
CDX1P47902 AC048346.1-201ENST00000510247 144 ntBASIC4□□□□□ -1.77
CDX1P47902 AC004980.4-201ENST00000513375 203 ntBASIC4□□□□□ -1.77
CDX1P47902 ENPP7P9-201ENST00000514456 627 ntBASIC4□□□□□ -1.77
CDX1P47902 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4□□□□□ -1.77
CDX1P47902 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 MTND2P26-201ENST00000528255 1029 ntBASIC4□□□□□ -1.77
CDX1P47902 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4□□□□□ -1.77
CDX1P47902 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4□□□□□ -1.77
CDX1P47902 ATP5J2P6-201ENST00000565203 266 ntBASIC4□□□□□ -1.77
CDX1P47902 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 AL445435.1-201ENST00000604232 665 ntBASIC4□□□□□ -1.77
CDX1P47902 AC011626.1-201ENST00000604710 562 ntBASIC4□□□□□ -1.77
CDX1P47902 AC093799.2-201ENST00000610062 578 ntBASIC4□□□□□ -1.77
CDX1P47902 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 AC026368.1-201ENST00000614934 690 ntBASIC4□□□□□ -1.77
CDX1P47902 AC004232.3-201ENST00000622977 525 ntBASIC4□□□□□ -1.77
CDX1P47902 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4□□□□□ -1.77
CDX1P47902 CASC19-206ENST00000641028 1430 ntBASIC4□□□□□ -1.77
CDX1P47902 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
CDX1P47902 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 EEF1A1P36-201ENST00000427807 1351 ntBASIC4□□□□□ -1.77
CDX1P47902 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4□□□□□ -1.77
CDX1P47902 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CDX1P47902 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CDX1P47902 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CDX1P47902 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CDX1P47902 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CDX1P47902 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CDX1P47902 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CDX1P47902 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC3.99□□□□□ -1.77
CDX1P47902 RNU6-619P-201ENST00000365146 108 ntBASIC3.99□□□□□ -1.77
CDX1P47902 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CDX1P47902 RNU6-444P-201ENST00000383988 108 ntBASIC3.99□□□□□ -1.77
CDX1P47902 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CDX1P47902 SNORA11B-201ENST00000408175 129 ntBASIC3.99□□□□□ -1.77
CDX1P47902 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 RNU2-21P-201ENST00000410368 188 ntBASIC3.99□□□□□ -1.77
CDX1P47902 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 AC004552.1-201ENST00000419089 348 ntBASIC3.99□□□□□ -1.77
CDX1P47902 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.99□□□□□ -1.77
CDX1P47902 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 AC009238.2-201ENST00000431026 355 ntBASIC3.99□□□□□ -1.77
CDX1P47902 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.99□□□□□ -1.77
CDX1P47902 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CDX1P47902 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 NOP56P2-201ENST00000447491 769 ntBASIC3.99□□□□□ -1.77
CDX1P47902 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC3.99□□□□□ -1.77
CDX1P47902 BX842559.2-201ENST00000451418 605 ntBASIC3.99□□□□□ -1.77
CDX1P47902 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC3.99□□□□□ -1.77
CDX1P47902 HMGN3P1-201ENST00000453847 193 ntBASIC3.99□□□□□ -1.77
CDX1P47902 RPS26P3-201ENST00000470205 348 ntBASIC3.99□□□□□ -1.77
CDX1P47902 RPL23AP2-201ENST00000471227 466 ntBASIC3.99□□□□□ -1.77
CDX1P47902 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC3.99□□□□□ -1.77
CDX1P47902 GAPDHP39-201ENST00000481866 979 ntBASIC3.99□□□□□ -1.77
CDX1P47902 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CDX1P47902 AC090543.2-201ENST00000483963 348 ntBASIC3.99□□□□□ -1.77
CDX1P47902 AC004057.1-201ENST00000485827 348 ntBASIC3.99□□□□□ -1.77
CDX1P47902 HMGN2P25-201ENST00000486956 268 ntBASIC3.99□□□□□ -1.77
CDX1P47902 RN7SL814P-201ENST00000487715 300 ntBASIC3.99□□□□□ -1.77
CDX1P47902 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.99□□□□□ -1.77
CDX1P47902 RNA5SP392-201ENST00000516905 112 ntBASIC3.99□□□□□ -1.77
CDX1P47902 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.99□□□□□ -1.77
CDX1P47902 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC3.99□□□□□ -1.77
CDX1P47902 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.99□□□□□ -1.77
CDX1P47902 DEFB130C-202ENST00000530001 230 ntBASIC3.99□□□□□ -1.77
CDX1P47902 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC3.99□□□□□ -1.77
CDX1P47902 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 136 ms