Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC6.2□□□□□ -1.42
CUX1P39880 AC068790.5-201ENST00000602741 355 ntBASIC6.2□□□□□ -1.42
CUX1P39880 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC6.2□□□□□ -1.42
CUX1P39880 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC6.2□□□□□ -1.42
CUX1P39880 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
CUX1P39880 OR4K6P-201ENST00000416478 897 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AL512649.1-201ENST00000428997 581 ntBASIC6.2□□□□□ -1.42
CUX1P39880 NPM1P25-201ENST00000429734 854 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AL591363.1-201ENST00000450091 483 ntBASIC6.2□□□□□ -1.42
CUX1P39880 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC6.2□□□□□ -1.42
CUX1P39880 AL049873.1-201ENST00000480540 376 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC6.2□□□□□ -1.42
CUX1P39880 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.2□□□□□ -1.42
CUX1P39880 AC010591.1-201ENST00000603941 649 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AL513477.2-201ENST00000607858 568 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AP000255.1-201ENST00000610276 676 ntBASIC6.2□□□□□ -1.42
CUX1P39880 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.2□□□□□ -1.42
CUX1P39880 ATE1-AS1-202ENST00000636460 506 ntBASIC6.2□□□□□ -1.42
CUX1P39880 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CUX1P39880 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.19□□□□□ -1.42
CUX1P39880 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
CUX1P39880 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
CUX1P39880 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
CUX1P39880 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC6.19□□□□□ -1.42
CUX1P39880 AC139426.3-201ENST00000605648 2059 ntBASIC6.19□□□□□ -1.42
CUX1P39880 UBE3AP2-201ENST00000429033 2259 ntBASIC6.19□□□□□ -1.42
CUX1P39880 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CUX1P39880 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
CUX1P39880 AC096644.3-201ENST00000416788 338 ntBASIC6.19□□□□□ -1.42
CUX1P39880 AC245054.1-201ENST00000420944 258 ntBASIC6.19□□□□□ -1.42
CUX1P39880 VN1R25P-201ENST00000443385 738 ntBASIC6.19□□□□□ -1.42
CUX1P39880 VN1R40P-201ENST00000455196 941 ntBASIC6.19□□□□□ -1.42
CUX1P39880 AGGF1P3-201ENST00000493675 1213 ntBASIC6.19□□□□□ -1.42
CUX1P39880 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC6.19□□□□□ -1.42
CUX1P39880 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC6.19□□□□□ -1.42
CUX1P39880 AC007066.2-202ENST00000566531 914 ntBASIC6.19□□□□□ -1.42
CUX1P39880 MIR7112-201ENST00000616126 65 ntBASIC6.19□□□□□ -1.42
CUX1P39880 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC6.19□□□□□ -1.42
CUX1P39880 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
CUX1P39880 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC6.18□□□□□ -1.42
CUX1P39880 SNORD17-201ENST00000390930 237 ntBASIC6.18□□□□□ -1.42
CUX1P39880 RNA5SP424-201ENST00000390988 115 ntBASIC6.18□□□□□ -1.42
CUX1P39880 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC6.18□□□□□ -1.42
CUX1P39880 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 AC108941.1-201ENST00000502853 530 ntBASIC6.18□□□□□ -1.42
CUX1P39880 AC010342.1-201ENST00000514047 877 ntBASIC6.18□□□□□ -1.42
CUX1P39880 CYP4A43P-201ENST00000568156 121 ntBASIC6.18□□□□□ -1.42
CUX1P39880 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC6.18□□□□□ -1.42
CUX1P39880 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
CUX1P39880 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC6.18□□□□□ -1.42
CUX1P39880 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
CUX1P39880 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 AC017079.2-201ENST00000416102 485 ntBASIC6.17□□□□□ -1.42
CUX1P39880 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC6.17□□□□□ -1.42
CUX1P39880 BTF3P5-201ENST00000457252 467 ntBASIC6.17□□□□□ -1.42
CUX1P39880 AC008481.1-201ENST00000463278 396 ntBASIC6.17□□□□□ -1.42
CUX1P39880 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC6.17□□□□□ -1.42
CUX1P39880 AC093663.1-201ENST00000497190 394 ntBASIC6.17□□□□□ -1.42
CUX1P39880 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC6.17□□□□□ -1.42
CUX1P39880 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC6.17□□□□□ -1.42
CUX1P39880 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC6.17□□□□□ -1.42
CUX1P39880 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC6.17□□□□□ -1.42
CUX1P39880 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 BCLAF1P2-201ENST00000624956 2609 ntBASIC6.17□□□□□ -1.42
CUX1P39880 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC6.17□□□□□ -1.42
CUX1P39880 USP8P1-201ENST00000494673 3183 ntBASIC6.17□□□□□ -1.42
CUX1P39880 AL133383.2-201ENST00000622958 2336 ntBASIC6.17□□□□□ -1.42
CUX1P39880 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
CUX1P39880 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CUX1P39880 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CUX1P39880 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CUX1P39880 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CUX1P39880 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
CUX1P39880 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC6.16□□□□□ -1.42
CUX1P39880 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC6.16□□□□□ -1.42
CUX1P39880 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC6.16□□□□□ -1.42
CUX1P39880 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC6.16□□□□□ -1.42
CUX1P39880 AC017015.1-201ENST00000477387 286 ntBASIC6.16□□□□□ -1.42
CUX1P39880 MTND6P6-201ENST00000478031 263 ntBASIC6.16□□□□□ -1.42
CUX1P39880 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC6.16□□□□□ -1.42
CUX1P39880 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC6.16□□□□□ -1.42
CUX1P39880 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC6.16□□□□□ -1.42
CUX1P39880 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
CUX1P39880 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
CUX1P39880 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
CUX1P39880 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms