Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DUXAP9-208ENST00000622815 614 ntBASIC5.22□□□□□ -1.57
MSX2P35548 5S_rRNA.29-201ENST00000641250 107 ntBASIC5.22□□□□□ -1.57
MSX2P35548 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.22□□□□□ -1.57
MSX2P35548 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 HSPD1P9-201ENST00000420325 1636 ntBASIC5.22□□□□□ -1.57
MSX2P35548 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.22□□□□□ -1.57
MSX2P35548 MTCO1P23-201ENST00000415223 1526 ntBASIC5.22□□□□□ -1.57
MSX2P35548 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
MSX2P35548 AC135352.1-201ENST00000506173 1418 ntBASIC5.22□□□□□ -1.57
MSX2P35548 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
MSX2P35548 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
MSX2P35548 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.21□□□□□ -1.57
MSX2P35548 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
MSX2P35548 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.21□□□□□ -1.57
MSX2P35548 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
MSX2P35548 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.57
MSX2P35548 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
MSX2P35548 ODF3-202ENST00000342593 386 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 Y_RNA.11-201ENST00000362375 109 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC007066.1-201ENST00000392902 381 ntBASIC5.21□□□□□ -1.58
MSX2P35548 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 AL161909.1-201ENST00000397390 712 ntBASIC5.21□□□□□ -1.58
MSX2P35548 YWHAZP6-201ENST00000399764 738 ntBASIC5.21□□□□□ -1.58
MSX2P35548 SNORA11C-201ENST00000408532 129 ntBASIC5.21□□□□□ -1.58
MSX2P35548 MIR1275-201ENST00000408770 80 ntBASIC5.21□□□□□ -1.58
MSX2P35548 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
MSX2P35548 RN7SKP86-201ENST00000410454 332 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 COX5BP7-201ENST00000414780 274 ntBASIC5.21□□□□□ -1.58
MSX2P35548 MTATP6P27-201ENST00000416987 621 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 GNG5P5-201ENST00000420444 220 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX2P35548 GLRXP1-201ENST00000423261 334 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC113412.1-201ENST00000425840 504 ntBASIC5.21□□□□□ -1.58
MSX2P35548 Z93242.1-201ENST00000427102 353 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC126120.1-201ENST00000431082 470 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AL365184.2-201ENST00000431139 435 ntBASIC5.21□□□□□ -1.58
MSX2P35548 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX2P35548 GAPDHP59-201ENST00000435908 267 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX2P35548 AL662791.1-201ENST00000441992 928 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC112653.1-201ENST00000443851 386 ntBASIC5.21□□□□□ -1.58
MSX2P35548 TPT1P14-201ENST00000448018 505 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX2P35548 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC5.21□□□□□ -1.58
MSX2P35548 AC098824.1-201ENST00000453565 980 ntBASIC5.21□□□□□ -1.58
MSX2P35548 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
MSX2P35548 AMD1P1-201ENST00000457220 922 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 RPL7P48-201ENST00000461513 746 ntBASIC5.21□□□□□ -1.58
MSX2P35548 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 RN7SL583P-201ENST00000475692 287 ntBASIC5.21□□□□□ -1.58
MSX2P35548 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 AC108471.1-201ENST00000513977 287 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC008802.1-201ENST00000519121 791 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AP002812.4-201ENST00000532139 286 ntBASIC5.21□□□□□ -1.58
MSX2P35548 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX2P35548 AC124947.2-202ENST00000552735 133 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 AC092332.1-201ENST00000563684 829 ntBASIC5.21□□□□□ -1.58
MSX2P35548 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC5.21□□□□□ -1.58
MSX2P35548 AL078601.3-201ENST00000573303 535 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.21□□□□□ -1.58
MSX2P35548 AC091304.9-201ENST00000612091 226 ntBASIC5.21□□□□□ -1.58
MSX2P35548 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 CR381653.2-201ENST00000624041 768 ntBASIC5.21□□□□□ -1.58
MSX2P35548 AC073592.6-201ENST00000624271 415 ntBASIC5.21□□□□□ -1.58
MSX2P35548 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 AC007996.1-201ENST00000620414 2821 ntBASIC5.21□□□□□ -1.58
MSX2P35548 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.21□□□□□ -1.58
MSX2P35548 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
MSX2P35548 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.21□□□□□ -1.58
MSX2P35548 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC5.2□□□□□ -1.58
MSX2P35548 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms