Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN3O15551 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN3O15551 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN3O15551 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CLDN3O15551 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CLDN3O15551 RNA5SP317-201ENST00000410176 116 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 RNA5SP311-201ENST00000411290 116 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 RANP4-201ENST00000413361 655 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 OR2X1P-201ENST00000421144 687 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 SEC63P1-201ENST00000425785 1258 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 AL160175.1-201ENST00000428124 247 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC4.53□□□□□ -1.68
CLDN3O15551 AC068587.1-201ENST00000483613 781 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 MTCO1P31-201ENST00000506355 492 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN3O15551 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 AC006499.6-201ENST00000511169 607 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN3O15551 RNA5SP315-201ENST00000516340 116 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 RNA5SP312-201ENST00000517068 116 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CLDN3O15551 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN3O15551 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.53□□□□□ -1.68
CLDN3O15551 MIR4716-201ENST00000579628 84 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.53□□□□□ -1.68
CLDN3O15551 BX322635.1-201ENST00000605804 496 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 AC017076.1-201ENST00000607613 578 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 AC104820.1-201ENST00000624183 307 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 NOL8P1-201ENST00000508336 3529 ntBASIC4.53□□□□□ -1.68
CLDN3O15551 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.53□□□□□ -1.68
CLDN3O15551 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CLDN3O15551 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.53□□□□□ -1.69
CLDN3O15551 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
CLDN3O15551 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.52□□□□□ -1.69
CLDN3O15551 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.52□□□□□ -1.69
CLDN3O15551 AC116667.1-201ENST00000604855 2072 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CLDN3O15551 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.52□□□□□ -1.69
CLDN3O15551 OR10J6P-201ENST00000289731 930 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 RN7SKP227-201ENST00000364445 330 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 SNORA62.2-201ENST00000364672 152 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 RNU6-452P-201ENST00000384406 107 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 MIR513A2-201ENST00000385249 127 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 ENSAP1-201ENST00000392855 326 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 RPL31P52-201ENST00000407532 367 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 AL138785.1-201ENST00000425821 331 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 MTCO1P52-201ENST00000433928 531 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 CBX1P4-201ENST00000439415 457 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.52□□□□□ -1.69
CLDN3O15551 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.52□□□□□ -1.69
CLDN3O15551 NUTF2P7-201ENST00000453086 375 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.52□□□□□ -1.69
CLDN3O15551 HPRT1P2-201ENST00000505250 544 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 AC093824.1-201ENST00000508796 343 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.52□□□□□ -1.69
CLDN3O15551 TOMM20P2-201ENST00000540082 421 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.52□□□□□ -1.69
CLDN3O15551 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.52□□□□□ -1.69
CLDN3O15551 AC007224.1-201ENST00000564410 144 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.52□□□□□ -1.69
CLDN3O15551 AC020910.2-201ENST00000603635 610 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 AC110792.4-201ENST00000609843 298 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 AC243654.2-201ENST00000612843 443 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 AP004607.9-201ENST00000618202 316 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 AC112484.5-201ENST00000624189 228 ntBASIC4.52□□□□□ -1.69
CLDN3O15551 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.52□□□□□ -1.69
CLDN3O15551 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CLDN3O15551 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
CLDN3O15551 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.52□□□□□ -1.69
CLDN3O15551 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
CLDN3O15551 OR11H4-201ENST00000315409 1082 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
CLDN3O15551 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC4.51□□□□□ -1.69
CLDN3O15551 RNU11-4P-201ENST00000391149 133 ntBASIC4.51□□□□□ -1.69
CLDN3O15551 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.51□□□□□ -1.69
CLDN3O15551 MTND4P11-201ENST00000417020 1058 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 99.2 ms