Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 APOC2-205ENST00000592257 444 ntTSL 3 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AL590032.1-201ENST00000604920 252 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AL592436.1-201ENST00000605135 558 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC011373.1-201ENST00000607270 237 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC010424.2-201ENST00000607594 443 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AL122023.1-201ENST00000622847 530 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC007792.1-201ENST00000623023 402 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 SNX18P10-201ENST00000625014 519 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AL159972.1-201ENST00000625150 448 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AL354702.2-202ENST00000641481 890 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC009902.3-201ENST00000606235 2172 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC009948.3-201ENST00000603415 1798 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 AC012618.3-205ENST00000637896 1496 ntBASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 GPCPD1-201ENST00000379019 5489 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
LIMD1Q9UGP4 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC129502.1-201ENST00000623261 1654 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AL139276.1-201ENST00000311910 1001 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 RNA5SP258-201ENST00000362750 119 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 Y_RNA.234-201ENST00000364409 97 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 RNU6-522P-201ENST00000364497 107 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 RNA5SP77-201ENST00000365394 120 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC091390.2-201ENST00000432573 374 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AL590128.1-201ENST00000433407 286 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 EIF4EBP2P1-201ENST00000450009 343 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC108059.3-201ENST00000456388 214 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 RN7SL552P-201ENST00000462094 276 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 RPL7L1P8-201ENST00000469911 741 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC021382.1-201ENST00000483523 359 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 CBX1-205ENST00000495350 550 ntTSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC011411.1-201ENST00000509592 876 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 VN1R107P-201ENST00000601784 209 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC087588.2-201ENST00000617667 426 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AL596245.1-201ENST00000618994 362 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 uc_338.22-201ENST00000622722 187 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 AC000123.2-201ENST00000623124 461 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 ZNF806-201ENST00000438300 1774 ntBASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 NOX1-204ENST00000372966 2529 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 MORC3-201ENST00000400485 4246 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 CD163-202ENST00000396620 3800 ntAPPRIS ALT2 TSL 2 BASIC7.09□□□□□ -1.27
LIMD1Q9UGP4 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC7.09□□□□□ -1.28
LIMD1Q9UGP4 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.28
LIMD1Q9UGP4 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
LIMD1Q9UGP4 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 LINC01697-202ENST00000426534 1764 ntTSL 2 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 MTCO1P7-201ENST00000419523 1542 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 ST7-206ENST00000393447 2182 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 ERBIN-205ENST00000416865 2351 ntTSL 2 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 RNU5A-8P-201ENST00000364102 114 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 U3.11-201ENST00000364476 212 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 RN7SKP78-201ENST00000364711 318 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 RNY3P13-201ENST00000365542 102 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 RNU6-903P-201ENST00000391270 109 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 MIR548K-201ENST00000408406 116 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 AC113618.1-201ENST00000416747 285 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 PMCHL1-202ENST00000423102 261 ntBASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 AC073257.1-201ENST00000432474 523 ntTSL 4 BASIC7.08□□□□□ -1.28
LIMD1Q9UGP4 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms