Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC138938.1-201ENST00000515431 782 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AP002812.4-201ENST00000532139 286 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC087894.1-201ENST00000538359 518 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 LSM3P2-201ENST00000551246 273 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC027104.1-201ENST00000563702 681 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC011458.1-201ENST00000604034 617 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 BX005019.1-201ENST00000561881 1810 ntBASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC3Q9BQI4 VN2R3P-201ENST00000422626 1412 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 THAP12P5-201ENST00000405864 2275 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC090017.1-201ENST00000548612 1779 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 RNA5SP515-201ENST00000364570 118 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC234772.1-201ENST00000377927 937 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 SNORA70C-201ENST00000384538 135 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 SNX10-203ENST00000409367 746 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 VN1R51P-201ENST00000411675 945 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC013404.1-201ENST00000413068 249 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 VTA1P1-201ENST00000414044 866 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AL445183.3-201ENST00000414168 502 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 TRGV6-201ENST00000417928 299 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 MED6P1-201ENST00000439659 713 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AL645931.1-201ENST00000439737 410 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC099063.2-201ENST00000446360 662 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 ISCUP1-201ENST00000454451 448 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 RPS27AP16-201ENST00000492222 470 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 PSMB7P1-201ENST00000556349 514 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC022884.3-201ENST00000579571 248 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 MIR3936-201ENST00000584304 110 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC008507.2-201ENST00000588402 1176 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AP001160.4-201ENST00000596971 382 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC105148.1-201ENST00000604961 409 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 COX6CP4-201ENST00000605798 228 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AP002802.2-201ENST00000605877 235 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AL008729.2-201ENST00000606393 473 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC020634.1-201ENST00000608701 549 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC097505.1-201ENST00000610199 565 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AL445567.2-201ENST00000618935 498 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC009269.6-201ENST00000621778 588 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AP003497.2-201ENST00000624220 967 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC096656.1-201ENST00000623826 1364 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AC093535.2-201ENST00000624769 2326 ntBASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC3Q9BQI4 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 SNORA62.2-201ENST00000364672 152 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 RNU6-925P-201ENST00000384629 104 ntBASIC4.37□□□□□ -1.71
CCDC3Q9BQI4 SNORA57.1-201ENST00000391227 145 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms