Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC135507.2-201ENST00000612443 309 ntBASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.78□□□□□ -1.64
CCDC88AQ3V6T2 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 DPPA2P2-201ENST00000418220 897 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 Z97055.1-201ENST00000419730 712 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 SUN3-208ENST00000453192 801 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 RPL31P61-201ENST00000496160 376 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 RPL23AP87-202ENST00000573039 466 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC016839.1-201ENST00000578162 867 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC020914.6-201ENST00000594327 272 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC124312.6-202ENST00000623624 418 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC020633.1-201ENST00000468439 2247 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 DDX18P6-201ENST00000450119 1997 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 SNORD35B-201ENST00000363660 87 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 GNG5P5-201ENST00000420444 220 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 SNX6P1-201ENST00000601728 1224 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
CCDC88AQ3V6T2 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AL591363.1-201ENST00000450091 483 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AC092691.2-201ENST00000461787 803 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AC005726.1-201ENST00000494679 427 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 HMGN1P11-201ENST00000508668 303 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 RNU7-143P-201ENST00000516781 65 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 IGKV2-38-201ENST00000517443 247 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AC087369.1-201ENST00000520775 996 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AP002001.2-201ENST00000529025 1469 ntBASIC4.76□□□□□ -1.65
CCDC88AQ3V6T2 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 OR6K3-202ENST00000368146 996 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 RNA5SP306-201ENST00000411087 107 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 NPM1P34-201ENST00000428821 893 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 PPBPP1-201ENST00000510807 373 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC079171.1-201ENST00000568788 914 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC015722.2-201ENST00000622210 551 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC073530.2-201ENST00000623987 261 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 HCFC2P1-201ENST00000392864 1592 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 SOD2P1-201ENST00000396543 562 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AL391219.1-201ENST00000422570 483 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 HIGD1AP4-201ENST00000430194 280 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 RANP8-201ENST00000444720 713 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 RPL21P6-201ENST00000479171 504 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 SETP1-201ENST00000556014 845 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 MIR6852-201ENST00000621699 66 ntBASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CCDC88AQ3V6T2 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.74□□□□□ -1.65
CCDC88AQ3V6T2 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms